Large-scale cis- and trans-eQTL analyses identify thousands of genetic loci and polygenic scores that regulate blood gene expression

…, B Lee, F Zhang, T Qi, JA Hernandez, W Arindrarto… - Nature …, 2021 - nature.com
Trait-associated genetic variants affect complex phenotypes primarily via regulatory mechanisms
on the transcriptome. To investigate the genetics of gene expression, we performed cis…

Unraveling the polygenic architecture of complex traits using blood eQTL metaanalysis

…, J Kettunen, J Powell, B Lee, F Zhang, W Arindrarto… - BioRxiv, 2018 - biorxiv.org
While many disease-associated variants have been identified through genome-wide association
studies, their downstream molecular consequences remain unclear. To identify these …

Disease variants alter transcription factor levels and methylation of their binding sites

…, J Van Rooij, N Lakenberg, W Arindrarto… - Nature …, 2017 - nature.com
Most disease-associated genetic variants are noncoding, making it challenging to design
experiments to understand their functional consequences 1 , 2 . Identification of expression …

Identification of context-dependent expression quantitative trait loci in whole blood

…, M Van Iterson, M Van Galen, W Arindrarto… - Nature …, 2017 - nature.com
Genetic risk factors often localize to noncoding regions of the genome with unknown effects
on disease etiology 1 , 2 . Expression quantitative trait loci (eQTLs) help to explain the …

[PDF][PDF] DNA methylation analysis identifies loci for blood pressure regulation

…, R Luijk, MJ Bonder, F van Dijk, W Arindrarto… - The American Journal of …, 2017 - cell.com
Genome-wide association studies have identified hundreds of genetic variants associated
with blood pressure (BP), but sequence variation accounts for a small fraction of the …

[PDF][PDF] Improving phenotypic prediction by combining genetic and epigenetic associations

…, R Luijk, MJ Bonder, F van Dijk, W Arindrarto… - The American Journal of …, 2015 - cell.com
We tested whether DNA-methylation profiles account for inter-individual variation in body
mass index (BMI) and height and whether they predict these phenotypes over and above …

[PDF][PDF] KeyGenes, a tool to probe tissue differentiation using a human fetal transcriptional atlas

…, L Van Iperen, Y Ariyurek, HP Buermans, W Arindrarto… - Stem cell reports, 2015 - cell.com
Differentiated derivatives of human pluripotent stem cells in culture are generally
phenotypically immature compared to their adult counterparts. Their identity is often difficult to …

[HTML][HTML] Refined mapping of autoimmune disease associated genetic variants with gene expression suggests an important role for non-coding RNAs

…, R Luijk, MJ Bonder, F van Dijk, W Arindrarto… - Journal of …, 2016 - Elsevier
Genome-wide association and fine-mapping studies in 14 autoimmune diseases (AID) have
implicated more than 250 loci in one or more of these diseases. As more than 90% of AID-…

[HTML][HTML] Comprehensive diagnostics of acute myeloid leukemia by whole transcriptome RNA sequencing

W Arindrarto, DM Borràs, RAL de Groen… - Leukemia, 2021 - nature.com
Acute myeloid leukemia (AML) is caused by genetic aberrations that also govern the prognosis
of patients and guide risk-adapted and targeted therapy. Genetic aberrations in AML are …

[HTML][HTML] Epigenome-wide association study of attention-deficit/hyperactivity disorder symptoms in adults

…, R Luijk, MJ Bonder, F van Dijk, W Arindrarto… - Biological …, 2019 - Elsevier
Background Previous studies have reported associations between attention-deficit/hyperactivity
disorder symptoms and DNA methylation in children. We report the first epigenome-wide …