User profiles for William J Rowell

William J Rowell

Sr. Staff Scientist, Pacific Biosciences
Verified email at pacificbiosciences.com
Cited by 2650

Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome

AM Wenger, P Peluso, WJ Rowell, PC Chang… - Nature …, 2019 - nature.com
The DNA sequencing technologies in use today produce either highly accurate short reads
or less-accurate long reads. We report the optimization of circular consensus sequencing (…

Mushroom body output neurons encode valence and guide memory-based action selection in Drosophila

…, AA Robie, N Yamagata, C Schnaitmann, WJ Rowell… - elife, 2014 - elifesciences.org
10.7554/eLife.04580.001 Animals discriminate stimuli, learn their predictive value and use
this knowledge to modify their behavior. In Drosophila, the mushroom body (MB) plays a key …

Curated variation benchmarks for challenging medically relevant autosomal genes

…, AM Wenger, WJ Rowell, ZM Khan, J Farek… - Nature …, 2022 - nature.com
The repetitive nature and complexity of some medically relevant genes poses a challenge
for their accurate analysis in a clinical setting. The Genome in a Bottle Consortium has …

DeepConsensus improves the accuracy of sequences with a gap-aware sequence transformer

…, A Belyaeva, A Töpfer, AM Wenger, WJ Rowell… - Nature …, 2023 - nature.com
Circular consensus sequencing with Pacific Biosciences (PacBio) technology generates
long (10–25 kilobases), accurate ‘HiFi’ reads by combining serial observations of a DNA …

[PDF][PDF] Benchmarking challenging small variants with linked and long reads

…, A Fungtammasan, CS Chin, AM Wenger, WJ Rowell… - Cell Genomics, 2022 - cell.com
Genome in a Bottle benchmarks are widely used to help validate clinical sequencing pipelines
and develop variant calling and sequencing methods. Here we use accurate linked and …

[HTML][HTML] Immunity regulatory DNAs share common organizational features in Drosophila

K Senger, GW Armstrong, WJ Rowell, JM Kwan… - Molecular cell, 2004 - cell.com
Infection results in the rapid activation of immunity genes in the Drosophila fat body. Two
classes of transcription factors have been implicated in this process: the REL-containing …

Characterization and visualization of tandem repeats at genome scale

…, G De Sena Brandine, T Mokveld, WJ Rowell… - Nature …, 2024 - nature.com
Tandem repeat (TR) variation is associated with gene expression changes and numerous
rare monogenic diseases. Although long-read sequencing provides accurate full-length …

[HTML][HTML] Genomic answers for children: Dynamic analyses of> 1000 pediatric rare disease genomes

…, LMB Puckett, JF Quezada, N Raje, WJ Rowell… - Genetics in …, 2022 - Elsevier
Purpose This study aimed to provide comprehensive diagnostic and candidate analyses in
a pediatric rare disease cohort through the Genomic Answers for Kids program. Methods …

[HTML][HTML] Comprehensive de novo mutation discovery with HiFi long-read sequencing

…, C Lambert, S Chakraborty, P Baybayan, WJ Rowell… - Genome Medicine, 2023 - Springer
Background Long-read sequencing (LRS) techniques have been very successful in identifying
structural variants (SVs). However, the high error rate of LRS made the detection of small …

[PDF][PDF] A population of descending neurons that regulates the flight motor of Drosophila

S Namiki, IG Ros, C Morrow, WJ Rowell, GM Card… - Current Biology, 2022 - cell.com
Similar to many insect species, Drosophila melanogaster is capable of maintaining a stable
flight trajectory for periods lasting up to several hours. Because aerodynamic torque is …