User profiles for William R. Holmes

William R. Holmes

Mathematics and Cognitive Science
Verified email at iu.edu
Cited by 1796

Cytosolic zinc buffering and muffling: Their role in intracellularzinc homeostasis

RA Colvin, WR Holmes, CP Fontaine, W Maret - Metallomics, 2010 - academic.oup.com
Our knowledge of the molecular mechanisms of intracellular homeostatic control of zinc ions
is now firmly grounded on experimental findings gleaned from the study of zinc proteomes …

Matching dendritic neuron models to experimental data

W Rall, RE Burke, WR Holmes, JJ Jack… - Physiological …, 1992 - journals.physiology.org
The explicit mathematical model presented by Hodgkin and Huxley (50) provided a giant
step forward in capturing the nonlinear properties of nerve membrane. The effort to increase …

Insights into Zn2+ homeostasis in neurons from experimental and modeling studies

…, D Thomas, K Kikuchi, WR Holmes - … of Physiology-Cell …, 2008 - journals.physiology.org
To understand the mechanisms of neuronal Zn 2+ homeostasis better, experimental data
obtained from cultured cortical neurons were used to inform a series of increasingly complex …

[HTML][HTML] The quality of response time data inference: A blinded, collaborative assessment of the validity of cognitive models

…, GE Hawkins, A Heathcote, WR Holmes… - Psychonomic bulletin & …, 2019 - Springer
Most data analyses rely on models. To complement statistical models, psychologists have
developed cognitive models, which translate observed variables into psychologically …

[HTML][HTML] A comparison of computational models for eukaryotic cell shape and motility

WR Holmes, L Edelstein-Keshet - PLoS computational biology, 2012 - journals.plos.org
Eukaryotic cell motility involves complex interactions of signalling molecules, cytoskeleton,
cell membrane, and mechanics interacting in space and time. Collectively, these components …

Insights into associative long-term potentiation from computational models of NMDA receptor-mediated calcium influx and intracellular calcium concentration changes

WR Holmes, WB Levy - Journal of neurophysiology, 1990 - journals.physiology.org
1. Because induction of associative long-term potentiation (LTP) in the dentate gyrus is
thought to depend on Ca2+ influx through channels controlled by N-methyl-D-aspartate (NMDA) …

LTP in hippocampal area CA1 is induced by burst stimulation over a broad frequency range centered around delta

…, E Kim, JD Cooke, WR Holmes - Learning & memory, 2009 - learnmem.cshlp.org
Long-term potentiation (LTP) is typically studied using either continuous high-frequency
stimulation or theta burst stimulation. Previous studies emphasized the physiological relevance …

[PDF][PDF] Archetype tasks link intratumoral heterogeneity to plasticity and cancer hallmarks in small cell lung cancer

…, KS Lau, WT Iams, DP Hardin, EB Saff, WR Holmes… - Cell systems, 2022 - cell.com
Small cell lung cancer (SCLC) tumors comprise heterogeneous mixtures of cell states,
categorized into neuroendocrine (NE) and non-neuroendocrine (non-NE) transcriptional subtypes…

A practical guide to the Probability Density Approximation (PDA) with improved implementation and error characterization

WR Holmes - Journal of Mathematical Psychology, 2015 - Elsevier
A critical task in modeling is to determine how well the theoretical assumptions encoded in
a model account for observations. Bayesian methods are an ideal framework for doing just …

From simple to detailed models for cell polarization

L Edelstein-Keshet, WR Holmes… - … Transactions of the …, 2013 - royalsocietypublishing.org
Many mathematical models have been proposed for the process of cell polarization. Some
of these are ‘functional models’ that capture a class of dynamical behaviour, whereas others …