[HTML][HTML] Multiomic atlas with functional stratification and developmental dynamics of zebrafish cis-regulatory elements

…, O Obasaju, S Rastegar, AC McGarvey, W Kopp… - Nature …, 2022 - nature.com
Zebrafish, a popular organism for studying embryonic development and for modeling human
diseases, has so far lacked a systematic functional annotation program akin to those in …

[HTML][HTML] Deep learning for genomics using Janggu

W Kopp, R Monti, A Tamburrini, U Ohler… - Nature …, 2020 - nature.com
In recent years, numerous applications have demonstrated the potential of deep learning for
an improved understanding of biological processes. However, most deep learning tools …

How western diet and lifestyle drive the pandemic of obesity and civilization diseases

W Kopp - Diabetes, metabolic syndrome and obesity: targets and …, 2019 - Taylor & Francis
Westernized populations are plagued by a plethora of chronic non-infectious degenerative
diseases, termed as “civilization diseases”, like obesity, diabetes, cardiovascular diseases, …

Development of obesity: the driver and the passenger

W Kopp - Diabetes, Metabolic Syndrome and Obesity, 2020 - Taylor & Francis
Obesity has reached epidemic proportions and is one of the greatest challenges for public
health in the twenty-first century. The macronutrient composition of diets, in particular the …

[PDF][PDF] Esrrb unlocks silenced enhancers for reprogramming to naive pluripotency

K Adachi, W Kopp, G Wu, S Heising, B Greber… - Cell stem cell, 2018 - cell.com
Transcription factor (TF)-mediated reprogramming to pluripotency is a slow and inefficient
process, because most pluripotency TFs fail to access relevant target sites in a refractory …

High-insulinogenic nutrition—an etiologic factor for obesity and the metabolic syndrome?

W Kopp - Metabolism, 2003 - Elsevier
This report postulates a critical role for the quantity and quality of dietary carbohydrate in the
pathogenesis of obesity and the metabolic syndrome. Significant changes in human …

[HTML][HTML] Simultaneous dimensionality reduction and integration for single-cell ATAC-seq data using deep learning

W Kopp, A Akalin, U Ohler - Nature Machine Intelligence, 2022 - nature.com
Advances in single-cell technologies enable the routine interrogation of chromatin
accessibility for tens of thousands of single cells, elucidating gene regulatory processes at an …

[HTML][HTML] Predicting lethal courses in critically ill COVID-19 patients using a machine learning model trained on patients with non-COVID-19 viral pneumonia

…, F Schiefenhövel, M Schmieding, C Jurth, W Kopp… - Scientific reports, 2021 - nature.com
In a pandemic with a novel disease, disease-specific prognosis models are available only
with a delay. To bridge the critical early phase, models built for similar diseases might be …

[HTML][HTML] Pathogenesis of (smoking-related) non-communicable diseases—Evidence for a common underlying pathophysiological pattern

W Kopp - Frontiers in Physiology, 2022 - frontiersin.org
Non-communicable diseases, like diabetes, cardiovascular diseases, cancer, stroke, chronic
obstructive pulmonary disease, osteoporosis, arthritis, Alzheimer’s disease and other more …

Diet-induced hyperinsulinemia as a key factor in the etiology of both benign prostatic hyperplasia and essential hypertension?

W Kopp - Nutrition and Metabolic Insights, 2018 - journals.sagepub.com
Benign prostatic hyperplasia and hypertension are common age-related comorbidities.
Although the etiology of benign prostatic hyperplasia (BPH) is still largely unresolved and poorly …