[HTML][HTML] An integrated map of structural variation in 2,504 human genomes
Structural variants are implicated in numerous diseases and make up the majority of varying
nucleotides among human genomes. Here we describe an integrated set of eight structural …
nucleotides among human genomes. Here we describe an integrated set of eight structural …
[HTML][HTML] Multi-platform discovery of haplotype-resolved structural variation in human genomes
…, W Xu, C Zhang, Q Zhu, X Zheng-Bradley… - Nature …, 2019 - nature.com
The incomplete identification of structural variants (SVs) from whole-genome sequencing
data limits studies of human genetic diversity and disease association. Here, we apply a suite …
data limits studies of human genetic diversity and disease association. Here, we apply a suite …
Punctuated bursts in human male demography inferred from 1,244 worldwide Y-chromosome sequences
…, M Romanovitch, C Zhang, X Zheng-Bradley… - Nature …, 2016 - nature.com
We report the sequences of 1,244 human Y chromosomes randomly ascertained from 26
worldwide populations by the 1000 Genomes Project. We discovered more than 65,000 …
worldwide populations by the 1000 Genomes Project. We discovered more than 65,000 …
[HTML][HTML] The 1000 Genomes Project: data management and community access
The 1000 Genomes Project was launched as one of the largest distributed data collection
and analysis projects ever undertaken in biology. In addition to the primary scientific goals of …
and analysis projects ever undertaken in biology. In addition to the primary scientific goals of …
The international Genome sample resource (IGSR): A worldwide collection of genome variation incorporating the 1000 Genomes Project data
L Clarke, S Fairley, X Zheng-Bradley… - Nucleic acids …, 2017 - academic.oup.com
The International Genome Sample Resource (IGSR; http://www.internationalgenome.org )
expands in data type and population diversity the resources from the 1000 Genomes Project. …
expands in data type and population diversity the resources from the 1000 Genomes Project. …
[HTML][HTML] The functional spectrum of low-frequency coding variation
…, M Bainbridge, T Blackwell, X Zheng-Bradley… - Genome biology, 2011 - Springer
Background Rare coding variants constitute an important class of human genetic variation,
but are underrepresented in current databases that are based on small population samples. …
but are underrepresented in current databases that are based on small population samples. …
[HTML][HTML] Large scale comparison of global gene expression patterns in human and mouse
Background It is widely accepted that orthologous genes between species are conserved at
the sequence level and perform similar functions in different organisms. However, the level …
the sequence level and perform similar functions in different organisms. However, the level …
[HTML][HTML] Variant calling on the GRCh38 assembly with the data from phase three of the 1000 Genomes Project
E Lowy-Gallego, S Fairley, X Zheng-Bradley… - Wellcome open …, 2019 - ncbi.nlm.nih.gov
We present a set of biallelic SNVs and INDELs, from 2,548 samples spanning 26 populations
from the 1000 Genomes Project, called de novo on GRCh38. We believe this will be a …
from the 1000 Genomes Project, called de novo on GRCh38. We believe this will be a …
Alignment of 1000 Genomes Project reads to reference assembly GRCh38
X Zheng-Bradley, I Streeter, S Fairley… - …, 2017 - academic.oup.com
The 1000 Genomes Project produced more than 100 trillion basepairs of short read sequence
from more than 2600 samples in 26 populations over a period of five years. In its final …
from more than 2600 samples in 26 populations over a period of five years. In its final …
Applications of the 1000 Genomes Project resources
X Zheng-Bradley, P Flicek - Briefings in functional genomics, 2017 - academic.oup.com
… Xiangqun Zheng-Bradley … Xiangqun Zheng-Bradley was a member of the 1000 Genomes
Data Coordination Centre and currently works on the International Genome Sample Resource. …
Data Coordination Centre and currently works on the International Genome Sample Resource. …