[HTML][HTML] An integrated map of structural variation in 2,504 human genomes

…, M Wang, F Yu, C Zhang, J Zhang, X Zheng-Bradley… - Nature, 2015 - nature.com
Structural variants are implicated in numerous diseases and make up the majority of varying
nucleotides among human genomes. Here we describe an integrated set of eight structural …

[HTML][HTML] Multi-platform discovery of haplotype-resolved structural variation in human genomes

…, W Xu, C Zhang, Q Zhu, X Zheng-Bradley… - Nature …, 2019 - nature.com
The incomplete identification of structural variants (SVs) from whole-genome sequencing
data limits studies of human genetic diversity and disease association. Here, we apply a suite …

Punctuated bursts in human male demography inferred from 1,244 worldwide Y-chromosome sequences

…, M Romanovitch, C Zhang, X Zheng-Bradley… - Nature …, 2016 - nature.com
We report the sequences of 1,244 human Y chromosomes randomly ascertained from 26
worldwide populations by the 1000 Genomes Project. We discovered more than 65,000 …

[HTML][HTML] The 1000 Genomes Project: data management and community access

L Clarke, X Zheng-Bradley, R Smith, E Kulesha… - Nature …, 2012 - nature.com
The 1000 Genomes Project was launched as one of the largest distributed data collection
and analysis projects ever undertaken in biology. In addition to the primary scientific goals of …

The international Genome sample resource (IGSR): A worldwide collection of genome variation incorporating the 1000 Genomes Project data

L Clarke, S Fairley, X Zheng-Bradley… - Nucleic acids …, 2017 - academic.oup.com
The International Genome Sample Resource (IGSR; http://www.internationalgenome.org )
expands in data type and population diversity the resources from the 1000 Genomes Project. …

[HTML][HTML] The functional spectrum of low-frequency coding variation

…, M Bainbridge, T Blackwell, X Zheng-Bradley… - Genome biology, 2011 - Springer
Background Rare coding variants constitute an important class of human genetic variation,
but are underrepresented in current databases that are based on small population samples. …

[HTML][HTML] Large scale comparison of global gene expression patterns in human and mouse

X Zheng-Bradley, J Rung, H Parkinson, A Brazma - Genome biology, 2010 - Springer
Background It is widely accepted that orthologous genes between species are conserved at
the sequence level and perform similar functions in different organisms. However, the level …

[HTML][HTML] Variant calling on the GRCh38 assembly with the data from phase three of the 1000 Genomes Project

E Lowy-Gallego, S Fairley, X Zheng-Bradley… - Wellcome open …, 2019 - ncbi.nlm.nih.gov
We present a set of biallelic SNVs and INDELs, from 2,548 samples spanning 26 populations
from the 1000 Genomes Project, called de novo on GRCh38. We believe this will be a …

Alignment of 1000 Genomes Project reads to reference assembly GRCh38

X Zheng-Bradley, I Streeter, S Fairley… - …, 2017 - academic.oup.com
The 1000 Genomes Project produced more than 100 trillion basepairs of short read sequence
from more than 2600 samples in 26 populations over a period of five years. In its final …

Applications of the 1000 Genomes Project resources

X Zheng-Bradley, P Flicek - Briefings in functional genomics, 2017 - academic.oup.com
… Xiangqun Zheng-Bradley … Xiangqun Zheng-Bradley was a member of the 1000 Genomes
Data Coordination Centre and currently works on the International Genome Sample Resource. …