In just a few years, microarrays have gone from obscurity to being almost ubiquitous in
biological research. At the same time, the statistical methodology for microarray analysis has …

Extracting biological information from microarray data requires appropriate statistical methods.
The simplest statistical method for detecting differential expression is the t test, which can …

The next-generation sequencing technologies are being rapidly applied in biological
research. Tens of millions of short sequences generated in a single experiment provide us …

Given the complexity of microarray-based gene expression studies, guidelines encourage
transparent design and public data availability. Several journals require public data …

Combining information across genes in the statistical analysis of microarray data is desirable
because of the relatively small number of data points obtained for each individual gene. …

The T cytoplasm of maize serves as a model for the nuclear restoration of cytoplasmic male
sterility. The rf2 gene, one of two nuclear genes required for fertility restoration in male-sterile …

We describe a software package called MAANOVA (MicroArray ANalysis Of VAriance).
MAANOVA is a collection of functions for statistical analysis of gene expression data from two-…

Some plant cytoplasms express novel mitochondrial genes that cause male sterility. Nuclear
genes that disrupt the accumulation of the corresponding mitochondrial gene products can …

Introduction Prior studies have established altered microbiota and immunologic reactivity to
enteric commensal organisms in inflammatory bowel disease (IBD). Since intestinal …

Previous reports have implicated an induction of genes in IFN/STAT1 (Interferon/STAT1)
signaling in radiation resistant and prosurvival tumor phenotypes in a number of cancer cell …