Age-related decrease in TCR repertoire diversity measured with deep and normalized sequence profiling

…, EA Bogdanova, IZ Mamedov, YB Lebedev… - The Journal of …, 2014 - journals.aai.org
The decrease of TCR diversity with aging has never been studied by direct methods. In this
study, we combined high-throughput Illumina sequencing with unique cDNA molecular …

[HTML][HTML] tcR: an R package for T cell receptor repertoire advanced data analysis

…, DA Bolotin, M Shugay, DM Chudakov, YB Lebedev… - BMC …, 2015 - Springer
Background The Immunoglobulins (IG) and the T cell receptors (TR) play the key role in
antigen recognition during the adaptive immune response. Recent progress in next-generation …

Next generation sequencing for TCR repertoire profiling: platform‐specific features and correction algorithms

…, S Lukyanov, YB Lebedev… - European journal of …, 2012 - Wiley Online Library
The TCR repertoire is a mirror of the human immune system that reflects processes caused
by infections, cancer, autoimmunity, and aging. Next generation sequencing (NGS) is …

[HTML][HTML] Preparing unbiased T-cell receptor and antibody cDNA libraries for the deep next generation sequencing profiling

…, DA Bolotin, EV Putintseva, YB Lebedev… - Frontiers in …, 2013 - frontiersin.org
High-throughput sequencing has the power to reveal the nature of adaptive immunity as
represented by the full complexity of T-cell receptor (TCR) and antibody (IG) repertoires, but is at …

Longitudinal high-throughput TCR repertoire profiling reveals the dynamics of T-cell memory formation after mild COVID-19 infection

…, DM Chudakov, T Mora, AM Walczak, YB Lebedev… - Elife, 2021 - elifesciences.org
COVID-19 is a global pandemic caused by the SARS-CoV-2 coronavirus. T cells play a key
role in the adaptive antiviral immune response by killing infected cells and facilitating the …

Distinctive properties of identical twins' TCR repertoires revealed by high-throughput sequencing

…, DM Chudakov, YB Lebedev… - Proceedings of the …, 2014 - National Acad Sciences
Adaptive immunity in humans is provided by hypervariable Ig-like molecules on the surface
of B and T cells. The final set of these molecules in each organism is formed under the …

[HTML][HTML] Detecting T cell receptors involved in immune responses from single repertoire snapshots

…, M Shugay, DM Chudakov, YB Lebedev… - PLoS …, 2019 - journals.plos.org
Hypervariable T cell receptors (TCRs) play a key role in adaptive immunity, recognizing a vast
diversity of pathogen-derived antigens. Our ability to extract clinically relevant information …

[HTML][HTML] Persisting fetal clonotypes influence the structure and overlap of adult human T cell receptor repertoires

…, DM Chudakov, IZ Mamedov, YB Lebedev… - PLoS computational …, 2017 - journals.plos.org
The diversity of T-cell receptors recognizing foreign pathogens is generated through a
highly stochastic recombination process, making the independent production of the same …

Quantitative profiling of immune repertoires for minor lymphocyte counts using unique molecular identifiers

…, AN Davydov, E Barsova, YB Lebedev… - The Journal of …, 2015 - journals.aai.org
Emerging high-throughput sequencing methods for the analyses of complex structure of TCR
and BCR repertoires give a powerful impulse to adaptive immunity studies. However, there …

Precise tracking of vaccine-responding T cell clones reveals convergent and personalized response in identical twins

…, T Mora, AM Walczak, YB Lebedev - Proceedings of the …, 2018 - National Acad Sciences
T cell receptor (TCR) repertoire data contain information about infections that could be used
in disease diagnostics and vaccine development, but extracting that information remains a …