[PDF][PDF] Transient reversal of RNA polymerase II active site closing controls fidelity of transcription elongation

ML Kireeva, YA Nedialkov, GH Cremona, YA Purtov… - Molecular cell, 2008 - cell.com
To study fidelity of RNA polymerase II (Pol II), we analyzed properties of the 6-azauracil-sensitive
and TFIIS-dependent E1103G mutant of rbp1 (rpo21), the gene encoding the catalytic …

[PDF][PDF] Structural basis for transcript elongation control by NusG family universal regulators

JY Kang, RA Mooney, Y Nedialkov, J Saba… - Cell, 2018 - cell.com
… Jin Young Kang,1 Rachel Anne Mooney,2 Yuri Nedialkov,3,4 Jason Saba,2 Tatiana V. …
states are indicated on the y axis. Data shown are means and SD from at least three replicates. …

[HTML][HTML] Rpb9 Subunit Controls Transcription Fidelity by Delaying NTP Sequestration in RNA Polymerase II*♦

C Walmacq, ML Kireeva, J Irvin, Y Nedialkov… - Journal of Biological …, 2009 - ASBMB
Rpb9 is a small non-essential subunit of yeast RNA polymerase II located on the surface on
the enzyme. Deletion of the RPB9 gene shows synthetic lethality with the low fidelity rpb1-…

[HTML][HTML] α-Amanitin blocks translocation by human RNA polymerase II

XQ Gong, YA Nedialkov, ZF Burton - Journal of Biological Chemistry, 2004 - ASBMB
Our laboratory has developed methods for transient state kinetic analysis of human RNA
polymerase II elongation. In these studies, multiple conformations of the RNA polymerase II …

[PDF][PDF] Ligand modulates cross-coupling between riboswitch folding and transcriptional pausing

JR Widom, YA Nedialkov, V Rai, RL Hayes, CL Brooks… - Molecular cell, 2018 - cell.com
Numerous classes of riboswitches have been found to regulate bacterial gene expression
in response to physiological cues, offering new paths to antibacterial drugs. As common …

[HTML][HTML] NTP-driven translocation by human RNA polymerase II

YA Nedialkov, XQ Gong, SL Hovde… - Journal of Biological …, 2003 - ASBMB
We report a "running start, two-bond" protocol to analyze elongation by human RNA
polymerase II (RNAP II). In this procedure, the running start allowed us to measure rapid rates of …

Resistance to lipopolysaccharide mediated by the Yersinia pestis V antigen-polyhistidine fusion peptide: amplification of interleukin-10

YA Nedialkov, VL Motin, RR Brubaker - Infection and immunity, 1997 - Am Soc Microbiol
We previously showed that injection of homogenous staphylococcal protein AV antigen fusion
peptide into mice delayed allograft rejection and suppressed the major proinflammatory …

The universally-conserved transcription factor RfaH is recruited to a hairpin structure of the non-template DNA strand

…, I Artsimovitch, M NandyMazumdar, Z Liu, Y Nedialkov… - elife, 2018 - elifesciences.org
10.7554/eLife.36349.001 RfaH, a transcription regulator of the universally conserved NusG/Spt5
family, utilizes a unique mode of recruitment to elongating RNA polymerase to activate …

Distributed biotin–streptavidin transcription roadblocks for mapping cotranscriptional RNA folding

EJ Strobel, KE Watters, Y Nedialkov… - Nucleic acids …, 2017 - academic.oup.com
RNA folding during transcription directs an order of folding that can determine RNA structure
and function. However, the experimental study of cotranscriptional RNA folding has been …

Molecular Characterization of KatY (Antigen 5), a Thermoregulated Chromosomally Encoded Catalase-Peroxidase of Yersinia pestis

E Garcia, YA Nedialkov, J Elliott, VL Motin… - Journal of …, 1999 - Am Soc Microbiol
… raised against outer membranes of Y. pestis was enriched for anti-KatY. A sequenced ∼16-kb
Y. pestis DNA insert of a … Y. pestis and closely related enteropathogenic yersiniae (…