[PDF][PDF] Transient reversal of RNA polymerase II active site closing controls fidelity of transcription elongation
ML Kireeva, YA Nedialkov, GH Cremona, YA Purtov… - Molecular cell, 2008 - cell.com
To study fidelity of RNA polymerase II (Pol II), we analyzed properties of the 6-azauracil-sensitive
and TFIIS-dependent E1103G mutant of rbp1 (rpo21), the gene encoding the catalytic …
and TFIIS-dependent E1103G mutant of rbp1 (rpo21), the gene encoding the catalytic …
[PDF][PDF] Structural basis for transcript elongation control by NusG family universal regulators
JY Kang, RA Mooney, Y Nedialkov, J Saba… - Cell, 2018 - cell.com
… Jin Young Kang,1 Rachel Anne Mooney,2 Yuri Nedialkov,3,4 Jason Saba,2 Tatiana V. …
states are indicated on the y axis. Data shown are means and SD from at least three replicates. …
states are indicated on the y axis. Data shown are means and SD from at least three replicates. …
[HTML][HTML] Rpb9 Subunit Controls Transcription Fidelity by Delaying NTP Sequestration in RNA Polymerase II*♦
C Walmacq, ML Kireeva, J Irvin, Y Nedialkov… - Journal of Biological …, 2009 - ASBMB
Rpb9 is a small non-essential subunit of yeast RNA polymerase II located on the surface on
the enzyme. Deletion of the RPB9 gene shows synthetic lethality with the low fidelity rpb1-…
the enzyme. Deletion of the RPB9 gene shows synthetic lethality with the low fidelity rpb1-…
[HTML][HTML] α-Amanitin blocks translocation by human RNA polymerase II
XQ Gong, YA Nedialkov, ZF Burton - Journal of Biological Chemistry, 2004 - ASBMB
Our laboratory has developed methods for transient state kinetic analysis of human RNA
polymerase II elongation. In these studies, multiple conformations of the RNA polymerase II …
polymerase II elongation. In these studies, multiple conformations of the RNA polymerase II …
[PDF][PDF] Ligand modulates cross-coupling between riboswitch folding and transcriptional pausing
Numerous classes of riboswitches have been found to regulate bacterial gene expression
in response to physiological cues, offering new paths to antibacterial drugs. As common …
in response to physiological cues, offering new paths to antibacterial drugs. As common …
[HTML][HTML] NTP-driven translocation by human RNA polymerase II
YA Nedialkov, XQ Gong, SL Hovde… - Journal of Biological …, 2003 - ASBMB
We report a "running start, two-bond" protocol to analyze elongation by human RNA
polymerase II (RNAP II). In this procedure, the running start allowed us to measure rapid rates of …
polymerase II (RNAP II). In this procedure, the running start allowed us to measure rapid rates of …
Resistance to lipopolysaccharide mediated by the Yersinia pestis V antigen-polyhistidine fusion peptide: amplification of interleukin-10
YA Nedialkov, VL Motin, RR Brubaker - Infection and immunity, 1997 - Am Soc Microbiol
We previously showed that injection of homogenous staphylococcal protein AV antigen fusion
peptide into mice delayed allograft rejection and suppressed the major proinflammatory …
peptide into mice delayed allograft rejection and suppressed the major proinflammatory …
The universally-conserved transcription factor RfaH is recruited to a hairpin structure of the non-template DNA strand
…, I Artsimovitch, M NandyMazumdar, Z Liu, Y Nedialkov… - elife, 2018 - elifesciences.org
10.7554/eLife.36349.001 RfaH, a transcription regulator of the universally conserved NusG/Spt5
family, utilizes a unique mode of recruitment to elongating RNA polymerase to activate …
family, utilizes a unique mode of recruitment to elongating RNA polymerase to activate …
Distributed biotin–streptavidin transcription roadblocks for mapping cotranscriptional RNA folding
EJ Strobel, KE Watters, Y Nedialkov… - Nucleic acids …, 2017 - academic.oup.com
RNA folding during transcription directs an order of folding that can determine RNA structure
and function. However, the experimental study of cotranscriptional RNA folding has been …
and function. However, the experimental study of cotranscriptional RNA folding has been …
Molecular Characterization of KatY (Antigen 5), a Thermoregulated Chromosomally Encoded Catalase-Peroxidase of Yersinia pestis
E Garcia, YA Nedialkov, J Elliott, VL Motin… - Journal of …, 1999 - Am Soc Microbiol
… raised against outer membranes of Y. pestis was enriched for anti-KatY. A sequenced ∼16-kb
Y. pestis DNA insert of a … Y. pestis and closely related enteropathogenic yersiniae (…
Y. pestis DNA insert of a … Y. pestis and closely related enteropathogenic yersiniae (…