User profiles for Yadollah Shahryary
 | Yadollah ShahryaryPh.D Verified email at tum.de Cited by 189 |
[HTML][HTML] A genome assembly and the somatic genetic and epigenetic mutation rate in a wild long-lived perennial Populus trichocarpa
…, J Denkena, M Colomé-Tatché, Y Shahryary… - Genome Biology, 2020 - Springer
Background Plants can transmit somatic mutations and epimutations to offspring, which in
turn can affect fitness. Knowledge of the rate at which these variations arise is necessary to …
turn can affect fitness. Knowledge of the rate at which these variations arise is necessary to …
Epimutations are associated with CHROMOMETHYLASE 3-induced de novo DNA methylation
10.7554/eLife.47891.001 In many plant species, a subset of transcribed genes are
characterized by strictly CG-context DNA methylation, referred to as gene body methylation (gbM). …
characterized by strictly CG-context DNA methylation, referred to as gene body methylation (gbM). …
[HTML][HTML] AlphaBeta: computational inference of epimutation rates and spectra from high-throughput DNA methylation data in plants
Stochastic changes in DNA methylation (ie, spontaneous epimutations) contribute to methylome
diversity in plants. Here, we describe AlphaBeta, a computational method for estimating …
diversity in plants. Here, we describe AlphaBeta, a computational method for estimating …
[HTML][HTML] MethylStar: A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing data
Y Shahryary, RR Hazarika, F Johannes - BMC genomics, 2020 - Springer
Background Whole-Genome Bisulfite Sequencing (WGBS) is a Next Generation Sequencing
(NGS) technique for measuring DNA methylation at base resolution. Continuing drops in …
(NGS) technique for measuring DNA methylation at base resolution. Continuing drops in …
The somatic genetic and epigenetic mutation rate in a wild long-lived perennial Populus trichocarpa
…, J Denkena, M Colomé-Tatché, Y Shahryary… - BioRxiv, 2019 - biorxiv.org
Background Plants can transmit somatic mutations and epimutations to offspring, which in
turn can affect fitness. Knowledge of the rate at which these variations arise is necessary to …
turn can affect fitness. Knowledge of the rate at which these variations arise is necessary to …
[PDF][PDF] MethylStar: A fast and robust pipeline for high-throughput analysis of bulk or single-cell WGBS data
Y Shahryary, RR Hazarika, F Johannes - pdfs.semanticscholar.org
Summary: Whole-Genome Bisulfite Sequencing (WGBS) is a Next Generation Sequenc- 2
ing (NGS) technique for measuring DNA methylation at base resolution. Recent drops in 3 …
ing (NGS) technique for measuring DNA methylation at base resolution. Recent drops in 3 …
[HTML][HTML] Methylome evolution in plants
Despite major progress in dissecting the molecular pathways that control DNA methylation
patterns in plants, little is known about the mechanisms that shape plant methylomes over …
patterns in plants, little is known about the mechanisms that shape plant methylomes over …
[HTML][HTML] METHimpute: imputation-guided construction of complete methylomes from WGBS data
A Taudt, D Roquis, A Vidalis, R Wardenaar… - BMC genomics, 2018 - Springer
Background Whole-genome bisulfite sequencing (WGBS) has become the standard method
for interrogating plant methylomes at base resolution. However, deep WGBS measurements …
for interrogating plant methylomes at base resolution. However, deep WGBS measurements …
Profiling genome-wide methylation in two maples: fine-scale approaches to detection with nanopore technology
DNA methylation is critical to the regulation of transposable elements and gene expression,
and can play an important role in the adaptation of stress response mechanisms in plants. …
and can play an important role in the adaptation of stress response mechanisms in plants. …