User profiles for Yanbao Yu

Yanbao Yu

Director of Proteomics, University of Delaware
Verified email at udel.edu
Cited by 8757

[HTML][HTML] Landscape of transcription in human cells

…, H Tilgner, D Trout, N Walters, H Wang, J Wrobel, Y Yu… - Nature, 2012 - nature.com
Eukaryotic cells make many types of primary and processed RNAs that are found either in
specific subcellular compartments or throughout the cells. A complete catalogue of these …

Long noncoding RNAs are rarely translated in two human cell lines

…, A Kundaje, HP Gunawardena, Y Yu… - Genome …, 2012 - genome.cshlp.org
Data from the Encyclopedia of DNA Elements (ENCODE) project show over 9640 human
genome loci classified as long noncoding RNAs (lncRNAs), yet only ∼100 have been deeply …

[PDF][PDF] Hepatitis B virus X protein promotes degradation of SMC5/6 to enhance HBV replication

…, Y Xu, F Li, K Nio, N Reszka-Blanco, X Li, Y Wu, Y Yu… - Cell reports, 2016 - cell.com
The hepatitis B virus (HBV) regulatory protein X (HBx) activates gene expression from the
HBV covalently closed circular DNA (cccDNA) genome. Interaction of HBx with the DDB1-…

[PDF][PDF] The mitochondrial proteins NLRX1 and TUFM form a complex that regulates type I interferon and autophagy

Y Lei, H Wen, Y Yu, DJ Taxman, L Zhang, DG Widman… - Immunity, 2012 - cell.com
The mitochondrial protein MAVS (also known as IPS-1, VISA, and CARDIF) interacts with
RIG-I-like receptors (RLRs) to induce type I interferon (IFN-I). NLRX1 is a mitochondrial …

S-Trap, an ultrafast sample-preparation approach for shotgun proteomics

…, S Bekele, G Ameni, R Pieper, Y Yu - Journal of proteome …, 2018 - ACS Publications
The success of shotgun proteomic analysis depends largely on how samples are prepared.
Current approaches (such as those that are gel-, solution-, or filter-based), although being …

[HTML][HTML] Application of nanomaterials in proteomics-driven precision medicine

Y Zhang, H Yang, Y Yu, Y Zhang - Theranostics, 2022 - ncbi.nlm.nih.gov
Nanostructured devices and nanoparticles have fundamentally reshaped the development
of precision healthcare in recent decades. Meanwhile, mass spectrometry (MS)-based …

[HTML][HTML] A genetic engineering strategy for editing near-infrared-II fluorophores

…, L Bai, C Ke, Y Liu, L Lang, S Zhu, H Sun, Y Yu… - Nature …, 2022 - nature.com
The second near-infrared (NIR-II) window is a fundamental modality for deep-tissue in vivo
imaging. However, it is challenging to synthesize NIR-II probes with high quantum yields (QYs…

Amino acid-coded tagging approaches in quantitative proteomics

X Chen, L Sun, Y Yu, Y Xue, P Yang - Expert review of proteomics, 2007 - Taylor & Francis
To improve the efficiency, accuracy, reproducibility, throughput and proteome coverage of
mass spectrometry-based quantitative approaches, both in vitro and in vivo tagging of …

[HTML][HTML] Microbial metagenome of urinary tract infection

…, W Li, H Singh, KJ Moncera, MG Torralba, Y Yu… - Scientific reports, 2018 - nature.com
Urine culture and microscopy techniques are used to profile the bacterial species present in
urinary tract infections. To gain insight into the urinary flora, we analyzed clinical laboratory …

[HTML][HTML] Modifications of superoxide dismutase (SOD1) in human erythrocytes: a possible role in amyotrophic lateral sclerosis

KC Wilcox, L Zhou, JK Jordon, Y Huang, Y Yu… - Journal of biological …, 2009 - ASBMB
Over 100 mutations in Cu/Zn-superoxide dismutase (SOD1) result in familial amyotrophic
lateral sclerosis. Dimer dissociation is the first step in SOD1 aggregation, and studies suggest …