User profiles for Yanbao Yu
Yanbao YuDirector of Proteomics, University of Delaware Verified email at udel.edu Cited by 8757 |
[HTML][HTML] Landscape of transcription in human cells
Eukaryotic cells make many types of primary and processed RNAs that are found either in
specific subcellular compartments or throughout the cells. A complete catalogue of these …
specific subcellular compartments or throughout the cells. A complete catalogue of these …
Long noncoding RNAs are rarely translated in two human cell lines
Data from the Encyclopedia of DNA Elements (ENCODE) project show over 9640 human
genome loci classified as long noncoding RNAs (lncRNAs), yet only ∼100 have been deeply …
genome loci classified as long noncoding RNAs (lncRNAs), yet only ∼100 have been deeply …
[PDF][PDF] Hepatitis B virus X protein promotes degradation of SMC5/6 to enhance HBV replication
The hepatitis B virus (HBV) regulatory protein X (HBx) activates gene expression from the
HBV covalently closed circular DNA (cccDNA) genome. Interaction of HBx with the DDB1-…
HBV covalently closed circular DNA (cccDNA) genome. Interaction of HBx with the DDB1-…
[PDF][PDF] The mitochondrial proteins NLRX1 and TUFM form a complex that regulates type I interferon and autophagy
The mitochondrial protein MAVS (also known as IPS-1, VISA, and CARDIF) interacts with
RIG-I-like receptors (RLRs) to induce type I interferon (IFN-I). NLRX1 is a mitochondrial …
RIG-I-like receptors (RLRs) to induce type I interferon (IFN-I). NLRX1 is a mitochondrial …
S-Trap, an ultrafast sample-preparation approach for shotgun proteomics
The success of shotgun proteomic analysis depends largely on how samples are prepared.
Current approaches (such as those that are gel-, solution-, or filter-based), although being …
Current approaches (such as those that are gel-, solution-, or filter-based), although being …
[HTML][HTML] Application of nanomaterials in proteomics-driven precision medicine
Y Zhang, H Yang, Y Yu, Y Zhang - Theranostics, 2022 - ncbi.nlm.nih.gov
Nanostructured devices and nanoparticles have fundamentally reshaped the development
of precision healthcare in recent decades. Meanwhile, mass spectrometry (MS)-based …
of precision healthcare in recent decades. Meanwhile, mass spectrometry (MS)-based …
[HTML][HTML] A genetic engineering strategy for editing near-infrared-II fluorophores
The second near-infrared (NIR-II) window is a fundamental modality for deep-tissue in vivo
imaging. However, it is challenging to synthesize NIR-II probes with high quantum yields (QYs…
imaging. However, it is challenging to synthesize NIR-II probes with high quantum yields (QYs…
Amino acid-coded tagging approaches in quantitative proteomics
To improve the efficiency, accuracy, reproducibility, throughput and proteome coverage of
mass spectrometry-based quantitative approaches, both in vitro and in vivo tagging of …
mass spectrometry-based quantitative approaches, both in vitro and in vivo tagging of …
[HTML][HTML] Microbial metagenome of urinary tract infection
Urine culture and microscopy techniques are used to profile the bacterial species present in
urinary tract infections. To gain insight into the urinary flora, we analyzed clinical laboratory …
urinary tract infections. To gain insight into the urinary flora, we analyzed clinical laboratory …
[HTML][HTML] Modifications of superoxide dismutase (SOD1) in human erythrocytes: a possible role in amyotrophic lateral sclerosis
Over 100 mutations in Cu/Zn-superoxide dismutase (SOD1) result in familial amyotrophic
lateral sclerosis. Dimer dissociation is the first step in SOD1 aggregation, and studies suggest …
lateral sclerosis. Dimer dissociation is the first step in SOD1 aggregation, and studies suggest …