User profiles for Yann Ponty
Yann PontyResearch director at CNRS & Ecole Polytechnique Verified email at lix.polytechnique.fr Cited by 3035 |
[HTML][HTML] VARNA: Interactive drawing and editing of the RNA secondary structure
VARNA is a tool for the automated drawing, visualization and annotation of the secondary
structure of RNA, designed as a companion software for web servers and databases. Features…
structure of RNA, designed as a companion software for web servers and databases. Features…
[PDF][PDF] The SARS-CoV-2 subgenome landscape and its novel regulatory features
Coronavirus disease 2019 (COVID-19), caused by severe acute respiratory syndrome
coronavirus 2 (SARS-CoV-2), is currently a global pandemic. CoVs are known to generate …
coronavirus 2 (SARS-CoV-2), is currently a global pandemic. CoVs are known to generate …
Effective rotation-invariant point cnn with spherical harmonics kernels
We present a novel rotation invariant architecture operating directly on point cloud data. We
demonstrate how rotation invariance can be injected into a recently proposed point-based …
demonstrate how rotation invariance can be injected into a recently proposed point-based …
ecceTERA: comprehensive gene tree-species tree reconciliation using parsimony
A gene tree-species tree reconciliation explains the evolution of a gene tree within the
species tree given a model of gene-family evolution. We describe ecceTERA, a program that …
species tree given a model of gene-family evolution. We describe ecceTERA, a program that …
Design of RNAs: comparing programs for inverse RNA folding
Computational programs for predicting RNA sequences with desired folding properties have
been extensively developed and expanded in the past several years. Given a secondary …
been extensively developed and expanded in the past several years. Given a secondary …
A weighted sampling algorithm for the design of RNA sequences with targeted secondary structure and nucleotide distribution
Motivations: The design of RNA sequences folding into predefined secondary structures is a
milestone for many synthetic biology and gene therapy studies. Most of the current software …
milestone for many synthetic biology and gene therapy studies. Most of the current software …
[HTML][HTML] Protein-protein interactions in a crowded environment: an analysis via cross-docking simulations and evolutionary information
Large-scale analyses of protein-protein interactions based on coarse-grain molecular docking
simulations and binding site predictions resulting from evolutionary sequence analysis, …
simulations and binding site predictions resulting from evolutionary sequence analysis, …
DIAL: a web server for the pairwise alignment of two RNA three-dimensional structures using nucleotide, dihedral angle and base-pairing similarities
DIAL (dihedral alignment) is a web server that provides public access to a new dynamic
programming algorithm for pairwise 3D structural alignment of RNA. DIAL achieves quadratic …
programming algorithm for pairwise 3D structural alignment of RNA. DIAL achieves quadratic …
DeCoSTAR: Reconstructing the ancestral organization of genes or genomes using reconciled phylogenies
DeCoSTAR is a software that aims at reconstructing the organization of ancestral genes or
genomes in the form of sets of neighborhood relations (adjacencies) between pairs of …
genomes in the form of sets of neighborhood relations (adjacencies) between pairs of …
[PDF][PDF] Multi-dimensional Boltzmann sampling of languages
O Bodini, Y Ponty - Discrete Mathematics & Theoretical …, 2010 - dmtcs.episciences.org
Random generation is the core of the simulation of complex data. It appears in real applicative
domains such as complex networks (biology, Internet or social relationship), or software …
domains such as complex networks (biology, Internet or social relationship), or software …