User profiles for Yohan Jarosz

Yohan Jarosz

LCSB
Verified email at uni.lu
Cited by 1077

The Virtual Metabolic Human database: integrating human and gut microbiome metabolism with nutrition and disease

A Noronha, J Modamio, Y Jarosz… - Nucleic acids …, 2019 - academic.oup.com
A multitude of factors contribute to complex diseases and can be measured with ‘omics’
methods. Databases facilitate data interpretation for underlying mechanisms. Here, we describe …

PredictProtein-predicting protein structure and function for 29 years

…, M Mirdita, P Gawron, W Gu, Y Jarosz… - Nucleic acids …, 2021 - academic.oup.com
Since 1992 PredictProtein ( https://predictprotein.org ) is a one-stop online resource for
protein sequence analysis with its main site hosted at the Luxembourg Centre for Systems …

The Bgee suite: integrated curated expression atlas and comparative transcriptomics in animals

…, WH Gharib, M Gonzales-Porta, Y Jarosz… - Nucleic acids …, 2021 - academic.oup.com
Bgee is a database to retrieve and compare gene expression patterns in multiple animal
species, produced by integrating multiple data types (RNA-Seq, Affymetrix, in situ hybridization, …

Quantifying ChIP-seq data: a spiking method providing an internal reference for sample-to-sample normalization

…, I Xenarios, E Migliavacca, F David, Y Jarosz… - Genome …, 2014 - genome.cshlp.org
Chromatin immunoprecipitation followed by deep sequencing (ChIP-seq) experiments are
widely used to determine, within entire genomes, the occupancy sites of any protein of interest…

[HTML][HTML] IMP: a pipeline for reproducible reference-independent integrated metagenomic and metatranscriptomic analyses

S Narayanasamy, Y Jarosz, EEL Muller… - Genome biology, 2016 - Springer
Existing workflows for the analysis of multi-omic microbiome datasets are lab-specific and
often result in sub-optimal data usage. Here we present IMP, a reproducible and modular …

[HTML][HTML] HTSstation: a web application and open-access libraries for high-throughput sequencing data analysis

…, S Carat, FJ Ross, G Lefebvre, Y Jarosz… - PloS one, 2014 - journals.plos.org
The HTSstation analysis portal is a suite of simple web forms coupled to modular analysis
pipelines for various applications of High-Throughput Sequencing including ChIP-seq, RNA-…

A multiplicity of factors contributes to selective RNA polymerase III occupancy of a subset of RNA polymerase III genes in mouse liver

…, V Vlegel, I Xenarios, F David, Y Jarosz… - Genome …, 2012 - genome.cshlp.org
The genomic loci occupied by RNA polymerase (RNAP) III have been characterized in
human culture cells by genome-wide chromatin immunoprecipitations, followed by deep …

[HTML][HTML] Drug-target identification in COVID-19 disease mechanisms using computational systems biology approaches

…, LI Furlong, I Balaur, A Rougny, Y Jarosz… - Frontiers in …, 2024 - frontiersin.org
Introduction The COVID-19 Disease Map project is a large-scale community effort uniting 277
scientists from 130 Institutions around the globe. We use high-quality, mechanistic content …

[HTML][HTML] Education as Risk Factor of Mild Cognitive Impairment: The Link to the Gut Microbiome

…, N Jacoby, J Jaroslaw Lebioda, Y Jarosz… - The Journal of …, 2024 - Springer
Background With differences apparent in the gut microbiome in mild cognitive impairment (MCI)
and dementia, and risk factors of dementia linked to alterations of the gut microbiome, …

DAISY: A Data Information System for accountability under the General Data Protection Regulation

R Becker, P Alper, V Grouès, S Munoz, Y Jarosz… - …, 2019 - academic.oup.com
Background The new European legislation on data protection, namely, the General Data
Protection Regulation (GDPR), has introduced comprehensive requirements for the …