User profiles for Yohan Jarosz
Yohan JaroszLCSB Verified email at uni.lu Cited by 1077 |
The Virtual Metabolic Human database: integrating human and gut microbiome metabolism with nutrition and disease
A multitude of factors contribute to complex diseases and can be measured with ‘omics’
methods. Databases facilitate data interpretation for underlying mechanisms. Here, we describe …
methods. Databases facilitate data interpretation for underlying mechanisms. Here, we describe …
PredictProtein-predicting protein structure and function for 29 years
Since 1992 PredictProtein ( https://predictprotein.org ) is a one-stop online resource for
protein sequence analysis with its main site hosted at the Luxembourg Centre for Systems …
protein sequence analysis with its main site hosted at the Luxembourg Centre for Systems …
The Bgee suite: integrated curated expression atlas and comparative transcriptomics in animals
…, WH Gharib, M Gonzales-Porta, Y Jarosz… - Nucleic acids …, 2021 - academic.oup.com
Bgee is a database to retrieve and compare gene expression patterns in multiple animal
species, produced by integrating multiple data types (RNA-Seq, Affymetrix, in situ hybridization, …
species, produced by integrating multiple data types (RNA-Seq, Affymetrix, in situ hybridization, …
Quantifying ChIP-seq data: a spiking method providing an internal reference for sample-to-sample normalization
…, I Xenarios, E Migliavacca, F David, Y Jarosz… - Genome …, 2014 - genome.cshlp.org
Chromatin immunoprecipitation followed by deep sequencing (ChIP-seq) experiments are
widely used to determine, within entire genomes, the occupancy sites of any protein of interest…
widely used to determine, within entire genomes, the occupancy sites of any protein of interest…
[HTML][HTML] IMP: a pipeline for reproducible reference-independent integrated metagenomic and metatranscriptomic analyses
Existing workflows for the analysis of multi-omic microbiome datasets are lab-specific and
often result in sub-optimal data usage. Here we present IMP, a reproducible and modular …
often result in sub-optimal data usage. Here we present IMP, a reproducible and modular …
[HTML][HTML] HTSstation: a web application and open-access libraries for high-throughput sequencing data analysis
…, S Carat, FJ Ross, G Lefebvre, Y Jarosz… - PloS one, 2014 - journals.plos.org
The HTSstation analysis portal is a suite of simple web forms coupled to modular analysis
pipelines for various applications of High-Throughput Sequencing including ChIP-seq, RNA-…
pipelines for various applications of High-Throughput Sequencing including ChIP-seq, RNA-…
A multiplicity of factors contributes to selective RNA polymerase III occupancy of a subset of RNA polymerase III genes in mouse liver
…, V Vlegel, I Xenarios, F David, Y Jarosz… - Genome …, 2012 - genome.cshlp.org
The genomic loci occupied by RNA polymerase (RNAP) III have been characterized in
human culture cells by genome-wide chromatin immunoprecipitations, followed by deep …
human culture cells by genome-wide chromatin immunoprecipitations, followed by deep …
[HTML][HTML] Drug-target identification in COVID-19 disease mechanisms using computational systems biology approaches
Introduction The COVID-19 Disease Map project is a large-scale community effort uniting 277
scientists from 130 Institutions around the globe. We use high-quality, mechanistic content …
scientists from 130 Institutions around the globe. We use high-quality, mechanistic content …
[HTML][HTML] Education as Risk Factor of Mild Cognitive Impairment: The Link to the Gut Microbiome
…, N Jacoby, J Jaroslaw Lebioda, Y Jarosz… - The Journal of …, 2024 - Springer
Background With differences apparent in the gut microbiome in mild cognitive impairment (MCI)
and dementia, and risk factors of dementia linked to alterations of the gut microbiome, …
and dementia, and risk factors of dementia linked to alterations of the gut microbiome, …
DAISY: A Data Information System for accountability under the General Data Protection Regulation
Background The new European legislation on data protection, namely, the General Data
Protection Regulation (GDPR), has introduced comprehensive requirements for the …
Protection Regulation (GDPR), has introduced comprehensive requirements for the …