Sequence Analysis of the Genome of an Oil-Bearing Tree, Jatropha curcas L.

…, T Aizu, A Toyoda, T Shin-i, Y Minakuchi… - DNA …, 2011 - academic.oup.com
The whole genome of Jatropha curcas was sequenced, using a combination of the conventional
Sanger method and new-generation multiplex sequencing methods. Total length of the …

[HTML][HTML] Extremotolerant tardigrade genome and improved radiotolerance of human cultured cells by tardigrade-unique protein

…, H Kozuka-Hata, T Shin-i, Y Minakuchi… - Nature …, 2016 - nature.com
Tardigrades, also known as water bears, are small aquatic animals. Some tardigrade
species tolerate almost complete dehydration and exhibit extraordinary tolerance to various …

Germline mutation rates and the long-term phenotypic effects of mutation accumulation in wild-type laboratory mice and mutator mice

A Uchimura, M Higuchi, Y Minakuchi, M Ohno… - Genome …, 2015 - genome.cshlp.org
The germline mutation rate is an important parameter that affects the amount of genetic
variation and the rate of evolution. However, neither the rate of germline mutations in laboratory …

[HTML][HTML] High-quality genome assembly of the silkworm, Bombyx mori

…, A Jouraku, A Toyoda, K Yokoi, Y Minakuchi… - Insect Biochemistry and …, 2019 - Elsevier
In 2008, the genome assembly and gene models for the domestic silkworm, Bombyx mori,
were published by a Japanese and Chinese collaboration group. However, the genome …

[HTML][HTML] Genome sequence and analysis of the Japanese morning glory Ipomoea nil

…, H Noguchi, T Itoh, T Shin-i, Y Minakuchi… - Nature …, 2016 - nature.com
Ipomoea is the largest genus in the family Convolvulaceae. Ipomoea nil (Japanese morning
glory) has been utilized as a model plant to study the genetic basis of floricultural traits, with …

[HTML][HTML] The Gonium pectorale genome demonstrates co-option of cell cycle regulation during the evolution of multicellularity

…, A Fujiyama, R Neme, H Noguchi, Y Minakuchi… - Nature …, 2016 - nature.com
The transition to multicellularity has occurred numerous times in all domains of life, yet its
initial steps are poorly understood. The volvocine green algae are a tractable system for …

[HTML][HTML] Platanus-allee is a de novo haplotype assembler enabling a comprehensive access to divergent heterozygous regions

R Kajitani, D Yoshimura, M Okuno, Y Minakuchi… - Nature …, 2019 - nature.com
The ultimate goal for diploid genome determination is to completely decode homologous
chromosomes independently, and several phasing programs from consensus sequences have …

[HTML][HTML] A chromosome-level genome sequence of Chrysanthemum seticuspe, a model species for hexaploid cultivated chrysanthemum

…, E Fukai, A Toyoda, R Kajitani, Y Minakuchi… - Communications …, 2021 - nature.com
Chrysanthemums are one of the most industrially important cut flowers worldwide. However,
their segmental allopolyploidy and self-incompatibility have prevented the application of …

[HTML][HTML] Comparison of genomic and epigenomic expression in monozygotic twins discordant for Rett syndrome

M Kunio, C Yang, Y Minakuchi, K Ohori, M Soutome… - PLoS …, 2013 - journals.plos.org
Monozygotic (identical) twins have been widely used in genetic studies to determine the
relative contributions of heredity and the environment in human diseases. Discordance in …

[HTML][HTML] Repeated inversions within a pannier intron drive diversification of intraspecific colour patterns of ladybird beetles

…, M Kobayashi, T Takano, Y Minakuchi… - Nature …, 2018 - nature.com
How genetic information is modified to generate phenotypic variation within a species is one
of the central questions in evolutionary biology. Here we focus on the striking intraspecific …