B cells and tertiary lymphoid structures promote immunotherapy response
…, J Blando, G Han, V Gopalakrishnan, Y Xi… - Nature, 2020 - nature.com
Abstract Treatment with immune checkpoint blockade (ICB) has revolutionized cancer therapy.
Until now, predictive biomarkers 1 , 2 , 3 , 4 , 5 , 6 , 7 , 8 , 9 – 10 and strategies to augment …
Until now, predictive biomarkers 1 , 2 , 3 , 4 , 5 , 6 , 7 , 8 , 9 – 10 and strategies to augment …
Dnmt3a is essential for hematopoietic stem cell differentiation
Loss of the de novo DNA methyltransferases Dnmt3a and Dnmt3b in embryonic stem cells
obstructs differentiation; however, the role of these enzymes in somatic stem cells is largely …
obstructs differentiation; however, the role of these enzymes in somatic stem cells is largely …
[HTML][HTML] BSMAP: whole genome bisulfite sequence MAPping program
Y Xi, W Li - BMC bioinformatics, 2009 - Springer
Background Bisulfite sequencing is a powerful technique to study DNA cytosine methylation.
Bisulfite treatment followed by PCR amplification specifically converts unmethylated …
Bisulfite treatment followed by PCR amplification specifically converts unmethylated …
Comparison of sequencing-based methods to profile DNA methylation and identification of monoallelic epigenetic modifications
Abstract Analysis of DNA methylation patterns relies increasingly on sequencing-based profiling
methods. The four most frequently used sequencing-based technologies are the bisulfite…
methods. The four most frequently used sequencing-based technologies are the bisulfite…
[HTML][HTML] Neoadjuvant chemotherapy plus nivolumab with or without ipilimumab in operable non-small cell lung cancer: the phase 2 platform NEOSTAR trial
…, MCB Godoy, H Feldman, WN William Jr, Y Xi… - Nature medicine, 2023 - nature.com
Neoadjuvant ipilimumab + nivolumab (Ipi+Nivo) and nivolumab + chemotherapy (Nivo+CT)
induce greater pathologic response rates than CT alone in patients with operable non-small …
induce greater pathologic response rates than CT alone in patients with operable non-small …
SIRT7 links H3K18 deacetylation to maintenance of oncogenic transformation
MF Barber, E Michishita-Kioi, Y Xi, L Tasselli, M Kioi… - Nature, 2012 - nature.com
Sirtuin proteins regulate diverse cellular pathways that influence genomic stability, metabolism
and ageing 1 , 2 . SIRT7 is a mammalian sirtuin whose biochemical activity, molecular …
and ageing 1 , 2 . SIRT7 is a mammalian sirtuin whose biochemical activity, molecular …
[PDF][PDF] Patterns of transcription factor programs and immune pathway activation define four major subtypes of SCLC with distinct therapeutic vulnerabilities
Despite molecular and clinical heterogeneity, small cell lung cancer (SCLC) is treated as a
single entity with predictably poor results. Using tumor expression data and non-negative …
single entity with predictably poor results. Using tumor expression data and non-negative …
[PDF][PDF] NSD2 links dimethylation of histone H3 at lysine 36 to oncogenic programming
The histone lysine methyltransferase NSD2 (MMSET/WHSC1) is implicated in diverse
diseases and commonly overexpressed in multiple myeloma due to a recurrent t(4;14) …
diseases and commonly overexpressed in multiple myeloma due to a recurrent t(4;14) …
DANPOS: dynamic analysis of nucleosome position and occupancy by sequencing
K Chen, Y Xi, X Pan, Z Li, K Kaestner, J Tyler… - Genome …, 2013 - genome.cshlp.org
Recent developments in next-generation sequencing have enabled whole-genome profiling
of nucleosome organizations. Although several algorithms for inferring nucleosome position …
of nucleosome organizations. Although several algorithms for inferring nucleosome position …
[PDF][PDF] AF9 YEATS domain links histone acetylation to DOT1L-mediated H3K79 methylation
The recognition of modified histones by "reader" proteins constitutes a key mechanism
regulating gene expression in the chromatin context. Compared with the great variety of readers …
regulating gene expression in the chromatin context. Compared with the great variety of readers …