[HTML][HTML] Coming of age: orphan genes in plants
ZW Arendsee, L Li, ES Wurtele - Trends in plant science, 2014 - cell.com
Sizable minorities of protein-coding genes from every sequenced eukaryotic and prokaryotic
genome are unique to the species. These so-called ‘orphan genes' may evolve de novo …
genome are unique to the species. These so-called ‘orphan genes' may evolve de novo …
QQS orphan gene regulates carbon and nitrogen partitioning across species via NF-YC interactions
The allocation of carbon and nitrogen resources to the synthesis of plant proteins,
carbohydrates, and lipids is complex and under the control of many genes; much remains to be …
carbohydrates, and lipids is complex and under the control of many genes; much remains to be …
Swine influenza A viruses and the tangled relationship with humans
…, J Chang, ZW Arendsee… - Cold Spring …, 2021 - perspectivesinmedicine.cshlp.org
Influenza A viruses (IAVs) are the causative agents of one of the most important viral
respiratory diseases in pigs and humans. Human and swine IAV are prone to interspecies …
respiratory diseases in pigs and humans. Human and swine IAV are prone to interspecies …
[HTML][HTML] Reverse-zoonoses of 2009 H1N1 pandemic influenza A viruses and evolution in United States swine results in viruses with zoonotic potential
A Markin, G Ciacci Zanella, ZW Arendsee… - PLoS …, 2023 - journals.plos.org
The 2009 H1N1 pandemic (pdm09) lineage of influenza A virus (IAV) crosses interspecies
barriers with frequent human-to-swine spillovers each year. These spillovers reassort and drift …
barriers with frequent human-to-swine spillovers each year. These spillovers reassort and drift …
Raising orphans from a metadata morass: A researcher's guide to re-use of public'omics data
More than 15 petabases of raw RNAseq data is now accessible through public repositories.
Acquisition of other ’omics data types is expanding, though most lack a centralized archival …
Acquisition of other ’omics data types is expanding, though most lack a centralized archival …
[PDF][PDF] smot: A python package and CLI tool for contextual phylogenetic subsampling
ZW Arendsee, ALV Baker, TK Anderson - Journal of Open Source …, 2022 - joss.theoj.org
smot (Simple Manipulation Of Trees) is a command line tool and Python package with the
pragmatic goal of distilling large-scale phylogenetic data to facilitate visualization without …
pragmatic goal of distilling large-scale phylogenetic data to facilitate visualization without …
Machine learning prediction and experimental validation of antigenic drift in H3 influenza A viruses in swine
The antigenic diversity of influenza A viruses (IAV) circulating in swine challenges the
development of effective vaccines, increasing zoonotic threat and pandemic potential. High-…
development of effective vaccines, increasing zoonotic threat and pandemic potential. High-…
octoFLUshow: an interactive tool describing spatial and temporal trends in the genetic diversity of influenza A virus in US swine
ZW Arendsee, J Chang, DE Hufnagel… - Microbiology …, 2021 - Am Soc Microbiol
Influenza A virus (IAV) is passively surveilled in swine in the United States through a US
Department of Agriculture administered surveillance system. We present an interactive Web tool …
Department of Agriculture administered surveillance system. We present an interactive Web tool …
[HTML][HTML] Interspecies transmission from pigs to ferrets of antigenically distinct swine H1 influenza A viruses with reduced reactivity to candidate vaccine virus antisera …
JB Kimble, CK Souza, TK Anderson, ZW Arendsee… - Viruses, 2022 - mdpi.com
During the last decade, endemic swine H1 influenza A viruses (IAV) from six different genetic
clades of the hemagglutinin gene caused zoonotic infections in humans. The majority of …
clades of the hemagglutinin gene caused zoonotic infections in humans. The majority of …
Characterizing a century of genetic diversity and contemporary antigenic diversity of N1 neuraminidase in influenza A virus from North American swine
DE Hufnagel, KM Young, ZW Arendsee, LC Gay… - Virus …, 2023 - academic.oup.com
Influenza A viruses (IAVs) of the H1N1 classical swine lineage became endemic in North
American swine following the 1918 pandemic. Additional human-to-swine transmission events …
American swine following the 1918 pandemic. Additional human-to-swine transmission events …