User profiles for Zev J. Gartner

Zev J Gartner

Professor of Pharmaceutical Chemistry, University of California San Francisco
Verified email at ucsf.edu
Cited by 9477

[PDF][PDF] DoubletFinder: doublet detection in single-cell RNA sequencing data using artificial nearest neighbors

CS McGinnis, LM Murrow, ZJ Gartner - Cell systems, 2019 - cell.com
Single-cell RNA sequencing (scRNA-seq) data are commonly affected by technical artifacts
known as "doublets," which limit cell throughput and lead to spurious biological conclusions. …

DNA-templated organic synthesis and selection of a library of macrocycles

ZJ Gartner, BN Tse, R Grubina, JB Doyon, TM Snyder… - Science, 2004 - science.org
The translation of nucleic acid libraries into corresponding synthetic compounds would
enable selection and amplification principles to be applied to man-made molecules. We used …

MULTI-seq: sample multiplexing for single-cell RNA sequencing using lipid-tagged indices

…, JS Weissman, Z Werb, ED Chow, ZJ Gartner - Nature …, 2019 - nature.com
Sample multiplexing facilitates scRNA-seq by reducing costs and identifying artifacts such as
cell doublets. However, universal and scalable sample barcoding strategies have not been …

[PDF][PDF] Lineage tracing reveals the phylodynamics, plasticity, and paths of tumor evolution

…, CS McGinnis, DM Patterson, ZJ Gartner… - Cell, 2022 - cell.com
Tumor evolution is driven by the progressive acquisition of genetic and epigenetic alterations
that enable uncontrolled growth and expansion to neighboring and distal tissues. The …

The generality of DNA-templated synthesis as a basis for evolving non-natural small molecules

ZJ Gartner, DR Liu - Journal of the American Chemical Society, 2001 - ACS Publications
Despite their limited chemical functionality, proteins and nucleic acids dominate the solutions
to many complex chemical problems because they can be evolved through iterated cycles …

Programmed assembly of 3-dimensional microtissues with defined cellular connectivity

ZJ Gartner, CR Bertozzi - Proceedings of the National …, 2009 - National Acad Sciences
Multicellular organs comprise differentiated cell types with discrete yet interdependent functions.
The cells' spatial arrangements and interconnectivities, both critical elements of higher-…

[HTML][HTML] Abseq: Ultrahigh-throughput single cell protein profiling with droplet microfluidic barcoding

P Shahi, SC Kim, JR Haliburton, ZJ Gartner… - Scientific reports, 2017 - nature.com
Proteins are the primary effectors of cellular function, including cellular metabolism, structural
dynamics, and information processing. However, quantitative characterization of proteins …

[PDF][PDF] Human microglia states are conserved across experimental models and regulate neural stem cell responses in chimeric organoids

…, D Shin, BB Chhun, CS McGinnis, M Speir, ZJ Gartner… - Cell Stem Cell, 2021 - cell.com
Microglia are resident macrophages in the brain that emerge in early development and respond
to the local environment by altering their molecular and phenotypic states. Fundamental …

Programmed synthesis of three-dimensional tissues

…, JC Garbe, MA LaBarge, TA Desai, ZJ Gartner - Nature …, 2015 - nature.com
Reconstituting tissues from their cellular building blocks facilitates the modeling of morphogenesis,
homeostasis and disease in vitro. Here we describe DNA-programmed assembly of …

[HTML][HTML] Microfluidics-free single-cell genomics with templated emulsification

…, W Karlon, JS Weissman, CC Smith, ZJ Gartner… - Nature …, 2023 - nature.com
Current single-cell RNA-sequencing approaches have limitations that stem from the microfluidic
devices or fluid handling steps required for sample processing. We develop a method …