User profiles for Zev J. Gartner
Zev J GartnerProfessor of Pharmaceutical Chemistry, University of California San Francisco Verified email at ucsf.edu Cited by 9477 |
[PDF][PDF] DoubletFinder: doublet detection in single-cell RNA sequencing data using artificial nearest neighbors
Single-cell RNA sequencing (scRNA-seq) data are commonly affected by technical artifacts
known as "doublets," which limit cell throughput and lead to spurious biological conclusions. …
known as "doublets," which limit cell throughput and lead to spurious biological conclusions. …
DNA-templated organic synthesis and selection of a library of macrocycles
ZJ Gartner, BN Tse, R Grubina, JB Doyon, TM Snyder… - Science, 2004 - science.org
The translation of nucleic acid libraries into corresponding synthetic compounds would
enable selection and amplification principles to be applied to man-made molecules. We used …
enable selection and amplification principles to be applied to man-made molecules. We used …
MULTI-seq: sample multiplexing for single-cell RNA sequencing using lipid-tagged indices
Sample multiplexing facilitates scRNA-seq by reducing costs and identifying artifacts such as
cell doublets. However, universal and scalable sample barcoding strategies have not been …
cell doublets. However, universal and scalable sample barcoding strategies have not been …
[PDF][PDF] Lineage tracing reveals the phylodynamics, plasticity, and paths of tumor evolution
Tumor evolution is driven by the progressive acquisition of genetic and epigenetic alterations
that enable uncontrolled growth and expansion to neighboring and distal tissues. The …
that enable uncontrolled growth and expansion to neighboring and distal tissues. The …
The generality of DNA-templated synthesis as a basis for evolving non-natural small molecules
ZJ Gartner, DR Liu - Journal of the American Chemical Society, 2001 - ACS Publications
Despite their limited chemical functionality, proteins and nucleic acids dominate the solutions
to many complex chemical problems because they can be evolved through iterated cycles …
to many complex chemical problems because they can be evolved through iterated cycles …
Programmed assembly of 3-dimensional microtissues with defined cellular connectivity
ZJ Gartner, CR Bertozzi - Proceedings of the National …, 2009 - National Acad Sciences
Multicellular organs comprise differentiated cell types with discrete yet interdependent functions.
The cells' spatial arrangements and interconnectivities, both critical elements of higher-…
The cells' spatial arrangements and interconnectivities, both critical elements of higher-…
[HTML][HTML] Abseq: Ultrahigh-throughput single cell protein profiling with droplet microfluidic barcoding
P Shahi, SC Kim, JR Haliburton, ZJ Gartner… - Scientific reports, 2017 - nature.com
Proteins are the primary effectors of cellular function, including cellular metabolism, structural
dynamics, and information processing. However, quantitative characterization of proteins …
dynamics, and information processing. However, quantitative characterization of proteins …
[PDF][PDF] Human microglia states are conserved across experimental models and regulate neural stem cell responses in chimeric organoids
Microglia are resident macrophages in the brain that emerge in early development and respond
to the local environment by altering their molecular and phenotypic states. Fundamental …
to the local environment by altering their molecular and phenotypic states. Fundamental …
Programmed synthesis of three-dimensional tissues
Reconstituting tissues from their cellular building blocks facilitates the modeling of morphogenesis,
homeostasis and disease in vitro. Here we describe DNA-programmed assembly of …
homeostasis and disease in vitro. Here we describe DNA-programmed assembly of …
[HTML][HTML] Microfluidics-free single-cell genomics with templated emulsification
…, W Karlon, JS Weissman, CC Smith, ZJ Gartner… - Nature …, 2023 - nature.com
Current single-cell RNA-sequencing approaches have limitations that stem from the microfluidic
devices or fluid handling steps required for sample processing. We develop a method …
devices or fluid handling steps required for sample processing. We develop a method …