User profiles for Zeyang Shen

Zeyang Shen

National Institutes of Health
Verified email at nih.gov
Cited by 679

Brain cell type–specific enhancer–promoter interactome maps and disease-risk association

…, C O'Connor, CK Nickl, ST Schafer, Z Shen… - Science, 2019 - science.org
Noncoding genetic variation is a major driver of phenotypic diversity, but functional interpretation
is challenging. To better understand common genetic variation associated with brain …

[HTML][HTML] SALL1 enforces microglia-specific DNA binding and function of SMADs to establish microglia identity

…, CZ Han, Y Zhou, NJ Spann, P Saisan, Z Shen… - Nature …, 2023 - nature.com
Spalt-like transcription factor 1 (SALL1) is a critical regulator of organogenesis and microglia
identity. Here we demonstrate that disruption of a conserved microglia-specific super-…

[PDF][PDF] The epigenetic state of IL-4-polarized macrophages enables inflammatory cistromic expansion and extended synergistic response to TLR ligands

…, Z Varga, K Bene, A Domokos, M Hoeksema, Z Shen… - Immunity, 2022 - cell.com
Prior exposure to microenvironmental signals could fundamentally change the response of
macrophages to subsequent stimuli. It is believed that T helper-2 (Th2)-cell-type cytokine …

[HTML][HTML] Diverse motif ensembles specify non-redundant DNA binding activities of AP-1 family members in macrophages

…, SH Duttke, NJ Spann, T Strid, Z Shen… - Nature …, 2019 - nature.com
Mechanisms by which members of the AP-1 family of transcription factors play non-redundant
biological roles despite recognizing the same DNA sequence remain poorly understood. …

Mechanisms underlying divergent responses of genetically distinct macrophages to IL-4

MA Hoeksema, Z Shen, IR Holtman, A Zheng… - Science …, 2021 - science.org
Mechanisms by which noncoding genetic variation influences gene expression remain only
partially understood but are considered to be major determinants of phenotypic diversity and …

[HTML][HTML] A genome catalog of the early-life human skin microbiome

Z Shen, L Robert, M Stolpman, Y Che, KJ Allen… - Genome Biology, 2023 - Springer
Background Metagenome-assembled genomes have greatly expanded the reference
genomes for skin microbiome. However, the current reference genomes are largely based on …

[HTML][HTML] The nuclear factor ID3 endows macrophages with a potent anti-tumour activity

Z Deng, PL Loyher, T Lazarov, L Li, Z Shen, B Bhinder… - Nature, 2024 - nature.com
Macrophage activation is controlled by a balance between activating and inhibitory receptors
1 , 2 , 3 , 4 , 5 , 6 – 7 , which protect normal tissues from excessive damage during infection …

[PDF][PDF] Expanded microbiome niches of RAG-deficient patients

RA Blaustein, Z Shen, SS Kashaf, SQ Lee-Lin… - Cell Reports …, 2023 - cell.com
The complex interplay between microbiota and immunity is important to human health. To
explore how altered adaptive immunity influences the microbiome, we characterize skin, nares…

MAGGIE: leveraging genetic variation to identify DNA sequence motifs mediating transcription factor binding and function

Z Shen, MA Hoeksema, Z Ouyang, C Benner… - …, 2020 - academic.oup.com
Motivation Genetic variation in regulatory elements can alter transcription factor (TF) binding
by mutating a TF binding motif, which in turn may affect the activity of the regulatory elements…

[HTML][HTML] The TBK1/IKKε inhibitor amlexanox improves dyslipidemia and prevents atherosclerosis

P Zhao, X Sun, Z Liao, H Yu, D Li, Z Shen, CK Glass… - JCI insight, 2022 - ncbi.nlm.nih.gov
Cardiovascular diseases, especially atherosclerosis and its complications, are a leading cause
of death. Inhibition of the noncanonical IκB kinases TANK-binding kinase 1 and IKKε with …