Histone modifications at human enhancers reflect global cell-type-specific gene expression

…, RD Hawkins, P Kheradpour, A Stark, LF Harp, Z Ye… - Nature, 2009 - nature.com
The human body is composed of diverse cell types with distinct functions. Although it is
known that lineage specification depends on cell-specific gene expression, which in turn is …

Metabolic regulation of gene expression by histone lactylation

…, S Lee, M Perez-Neut, J Ding, D Czyz, R Hu, Z Ye… - Nature, 2019 - nature.com
The Warburg effect, which originally described increased production of lactate in cancer, is
associated with diverse cellular processes such as angiogenesis, hypoxia, polarization of …

[HTML][HTML] Identification of 67 histone marks and histone lysine crotonylation as a new type of histone modification

…, N Rajagopal, Z Lu, Z Ye, Q Zhu, J Wysocka, Y Ye… - Cell, 2011 - cell.com
We report the identification of 67 previously undescribed histone modifications, increasing
the current number of known histone marks by about 70%. We further investigated one of the …

Human DNA methylomes at base resolution show widespread epigenomic differences

…, G Hon, J Tonti-Filippini, JR Nery, L Lee, Z Ye… - nature, 2009 - nature.com
DNA cytosine methylation is a central epigenetic modification that has essential roles in cellular
processes including genome regulation, development and disease. Here we present the …

[HTML][HTML] A comparative encyclopedia of DNA elements in the mouse genome

…, R Byron, MT Groudine, D McCleary, L Pham, Z Ye… - Nature, 2014 - nature.com
The laboratory mouse shares the majority of its protein-coding genes with humans, making
it the premier model organism in biomedical research, yet the two mammals differ in …

[HTML][HTML] Chromatin architecture reorganization during stem cell differentiation

…, Y Shen, JE Antosiewicz-Bourget, AY Lee, Z Ye… - Nature, 2015 - nature.com
Higher-order chromatin structure is emerging as an important regulator of gene expression.
Although dynamic chromatin structures have been identified in the genome, the full scope of …

A map of the cis-regulatory sequences in the mouse genome

Y Shen, F Yue, DF McCleary, Z Ye, L Edsall, S Kuan… - Nature, 2012 - nature.com
The laboratory mouse is the most widely used mammalian model organism in biomedical
research. The 2.6 × 10 9 bases of the mouse genome possess a high degree of conservation …

A high-resolution map of the three-dimensional chromatin interactome in human cells

F Jin, Y Li, JR Dixon, S Selvaraj, Z Ye, AY Lee, CA Yen… - Nature, 2013 - nature.com
A large number of cis-regulatory sequences have been annotated in the human genome 1 ,
2 , but defining their target genes remains a challenge 3 . One strategy is to identify the long-…

Prevalence of diabetes recorded in mainland China using 2018 diagnostic criteria from the American Diabetes Association: national cross sectional study

…, Y Wang, Y Xue, L Yan, J Yang, L Yang, Y Yao, Z Ye… - bmj, 2020 - bmj.com
Objective To assess the prevalence of diabetes and its risk factors. Design Population based,
cross sectional study. Setting 31 provinces in mainland China with nationally …

[HTML][HTML] Insulin-degrading enzyme regulates extracellular levels of amyloid β-protein by degradation

WQ Qiu, DM Walsh, Z Ye, K Vekrellis, J Zhang… - Journal of Biological …, 1998 - ASBMB
Excessive cerebral accumulation of the 42-residue amyloid β-protein (Aβ) is an early and
invariant step in the pathogenesis of Alzheimer's disease. Many studies have examined the …