User profiles for Zhibin Ning
Zhibin NingUniversity of ottawa Verified email at uottawa.ca Cited by 4518 |
Bottom-up proteomics (2013–2015): keeping up in the era of systems biology
Over 17,000 papers related to proteomics have been published since our 2011− 2013 review.
A subset are true gems reporting amazing applications of proteomics to better understand …
A subset are true gems reporting amazing applications of proteomics to better understand …
MicroRNA, mRNA, and protein expression link development and aging in human and macaque brain
Changes in gene expression levels determine differentiation of tissues involved in development
and are associated with functional decline in aging. Although development is tightly …
and are associated with functional decline in aging. Although development is tightly …
Metaproteomic and metabolomic approaches for characterizing the gut microbiome
The gut microbiome has been shown to play a significant role in human healthy and diseased
states. The dynamic signaling that occurs between the host and microbiome is critical for …
states. The dynamic signaling that occurs between the host and microbiome is critical for …
Widespread splicing changes in human brain development and aging
…, YP Phoebe Chen, N Li, Y Hu, N Fu, Z Ning… - Molecular systems …, 2013 - embopress.org
While splicing differences between tissues, sexes and species are well documented, little is
known about the extent and the nature of splicing changes that take place during human or …
known about the extent and the nature of splicing changes that take place during human or …
[HTML][HTML] Metaproteomics reveals associations between microbiome and intestinal extracellular vesicle proteins in pediatric inflammatory bowel disease
Alterations in gut microbiota have been implicated in the pathogenesis of inflammatory
bowel disease (IBD), however factors that mediate the host–microbiota interactions remain …
bowel disease (IBD), however factors that mediate the host–microbiota interactions remain …
[HTML][HTML] MetaPro-IQ: a universal metaproteomic approach to studying human and mouse gut microbiota
Background The gut microbiota has been shown to be closely associated with human
health and disease. While next-generation sequencing can be readily used to profile the …
health and disease. While next-generation sequencing can be readily used to profile the …
[HTML][HTML] Proteomic and metaproteomic approaches to understand host–microbe interactions
The human body is composed not only of human cells but is occupied by bacteria, archaea,
fungi, and viruses; this ensemble of organisms (microbiota) and their expressed genes are …
fungi, and viruses; this ensemble of organisms (microbiota) and their expressed genes are …
[HTML][HTML] MetaLab: an automated pipeline for metaproteomic data analysis
Background Research involving microbial ecosystems has drawn increasing attention in
recent years. Studying microbe-microbe, host-microbe, and environment-microbe interactions …
recent years. Studying microbe-microbe, host-microbe, and environment-microbe interactions …
Assessing the impact of protein extraction methods for human gut metaproteomics
Metaproteomics is a promising methodology for the functional characterizations of the gut
microbiome. However, the performance of metaproteomic analysis is affected by protein …
microbiome. However, the performance of metaproteomic analysis is affected by protein …
[HTML][HTML] An in vitro model maintaining taxon-specific functional activities of the gut microbiome
In vitro gut microbiome models could provide timely and cost-efficient solutions to study
microbiome responses to drugs. For this purpose, in vitro models that maintain the functional and …
microbiome responses to drugs. For this purpose, in vitro models that maintain the functional and …