User profiles for Zhongming Zhao

Zhongming Zhao

University of Texas Health Science Center at Houston
Verified email at uth.tmc.edu
Cited by 26176

[PDF][PDF] Genomic and molecular landscape of DNA damage repair deficiency across the cancer genome atlas

…, J Liu, H Hu, MH Bailey, C Yau, D Wolf, Z Zhao… - Cell reports, 2018 - cell.com
DNA damage repair (DDR) pathways modulate cancer risk, progression, and therapeutic
response. We systematically analyzed somatic alterations to provide a comprehensive view of …

[HTML][HTML] Alveolar regeneration through a Krt8+ transitional stem cell state that persists in human lung fibrosis

…, A Sengupta, I Kukhtevich, R Schneider, Z Zhao… - Nature …, 2020 - nature.com
The cell type specific sequences of transcriptional programs during lung regeneration have
remained elusive. Using time-series single cell RNA-seq of the bleomycin lung injury model, …

[HTML][HTML] Computational tools for copy number variation (CNV) detection using next-generation sequencing data: features and perspectives

M Zhao, Q Wang, Q Wang, P Jia, Z Zhao - BMC bioinformatics, 2013 - Springer
Copy number variation (CNV) is a prevalent form of critical genetic variation that leads to an
abnormal number of copies of large genomic regions in a cell. Microarray-based …

Psychiatric genome-wide association study analyses implicate neuronal, immune and histone pathways

…, KS Kendler, LA Weiss, NR Wray, Z Zhao… - Nature …, 2015 - nature.com
… In the version of this article initially published, the name of author Zhongming Zhao was
misspelled Zhaoming Zhao. The error has been corrected in the HTML and PDF versions of the …

[PDF][PDF] Hdac3 is essential for the maintenance of chromatin structure and genome stability

…, CE Wells, JF Kaiser, MK Washington, Z Zhao… - Cancer cell, 2010 - cell.com
Hdac3 is essential for efficient DNA replication and DNA damage control. Deletion of Hdac3
impaired DNA repair and greatly reduced chromatin compaction and heterochromatin …

[PDF][PDF] The allergy mediator histamine confers resistance to immunotherapy in cancer patients via activation of the macrophage histamine receptor H1

…, P Li, WL Kuo, A Halpin, DL Gibbons, H Yagita, Z Zhao… - Cancer cell, 2022 - cell.com
Reinvigoration of antitumor immunity remains an unmet challenge. Our retrospective analyses
revealed that cancer patients who took antihistamines during immunotherapy treatment …

TSGene 2.0: an updated literature-based knowledgebase for tumor suppressor genes

M Zhao, P Kim, R Mitra, J Zhao, Z Zhao - Nucleic acids research, 2016 - academic.oup.com
Tumor suppressor genes (TSGs) are a major type of gatekeeper genes in the cell growth. A
knowledgebase with the systematic collection and curation of TSGs in multiple cancer types …

TSGene: a web resource for tumor suppressor genes

M Zhao, J Sun, Z Zhao - Nucleic acids research, 2013 - academic.oup.com
Tumor suppressor genes (TSGs) are guardian genes that play important roles in controlling
cell proliferation processes such as cell-cycle checkpoints and inducing apoptosis. …

dmGWAS: dense module searching for genome-wide association studies in protein–protein interaction networks

P Jia, S Zheng, J Long, W Zheng, Z Zhao - Bioinformatics, 2011 - academic.oup.com
Motivation: An important question that has emerged from the recent success of genome-wide
association studies (GWAS) is how to detect genetic signals beyond single markers/genes …

Machine learning-based prediction of drug–drug interactions by integrating drug phenotypic, therapeutic, chemical, and genomic properties

F Cheng, Z Zhao - Journal of the American Medical Informatics …, 2014 - academic.oup.com
Objective Drug–drug interactions (DDIs) are an important consideration in both drug
development and clinical application, especially for co-administered medications. While it is …