New Results
Benchmarking challenging small variants with linked and long reads
Justin Wagner, Nathan D Olson, Lindsay Harris, Ziad Khan, Jesse Farek, Medhat Mahmoud, Ana Stankovic, Vladimir Kovacevic, Aaron M Wenger, William J Rowell, Chunlin Xiao, Byunggil Yoo, Neil Miller, View ORCID ProfileJeffrey A. Rosenfeld, Bohan Ni, Samantha Zarate, Melanie Kirsche, Sergey Aganezov, Michael Schatz, View ORCID ProfileGiuseppe Narzisi, Marta Byrska-Bishop, Wayne Clarke, Uday S. Evani, Charles Markello, Kishwar Shafin, Xin Zhou, View ORCID ProfileArend Sidow, Vikas Bansal, Alvaro Martinez Barrio, Ian T Fiddes, Arkarachai Fungtammasan, Chen-Shan Chin, Fritz J Sedlazeck, Andrew Carroll, Marc Salit, Justin M Zook
doi: https://doi.org/10.1101/2020.07.24.212712
Justin Wagner
1Material Measurement Laboratory, National Institute of Standards and Technology, 100 Bureau Dr, MS8312, Gaithersburg, MD 20899, USA
Nathan D Olson
1Material Measurement Laboratory, National Institute of Standards and Technology, 100 Bureau Dr, MS8312, Gaithersburg, MD 20899, USA
Lindsay Harris
1Material Measurement Laboratory, National Institute of Standards and Technology, 100 Bureau Dr, MS8312, Gaithersburg, MD 20899, USA
Ziad Khan
2Human Genome Sequencing Center, Baylor College of Medicine, One Baylor Plaza, Houston TX 77030, USA
Jesse Farek
2Human Genome Sequencing Center, Baylor College of Medicine, One Baylor Plaza, Houston TX 77030, USA
Medhat Mahmoud
2Human Genome Sequencing Center, Baylor College of Medicine, One Baylor Plaza, Houston TX 77030, USA
Ana Stankovic
3Seven Bridges, Omladinskih brigada 90g, 11070 Belgrade, Republic of Serbia
Vladimir Kovacevic
4School of Electrical Engineering, University in Belgrade, Bulevar kralja Aleksandra 73, Belgrade, Republic of Serbia
Aaron M Wenger
5Pacific Biosciences, Menlo Park, CA 94025, USA
William J Rowell
5Pacific Biosciences, Menlo Park, CA 94025, USA
Chunlin Xiao
6National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, 8600 Rockville Pike, Bethesda, MD 20894, USA
Byunggil Yoo
7Children’s Mercy Kansas City, Kansas City, MO, USA
Neil Miller
7Children’s Mercy Kansas City, Kansas City, MO, USA
Jeffrey A. Rosenfeld
8Rutgers Cancer Institute of New Jersey, New Brunswick, NJ, USA
Bohan Ni
9Department of Computer Science, Johns Hopkins University, Baltimore, USA
Samantha Zarate
9Department of Computer Science, Johns Hopkins University, Baltimore, USA
Melanie Kirsche
9Department of Computer Science, Johns Hopkins University, Baltimore, USA
Sergey Aganezov
9Department of Computer Science, Johns Hopkins University, Baltimore, USA
Michael Schatz
9Department of Computer Science, Johns Hopkins University, Baltimore, USA
Giuseppe Narzisi
10New York Genome Center, 101 Avenue of the Americas, New York, NY, USA
Marta Byrska-Bishop
10New York Genome Center, 101 Avenue of the Americas, New York, NY, USA
Wayne Clarke
10New York Genome Center, 101 Avenue of the Americas, New York, NY, USA
Uday S. Evani
10New York Genome Center, 101 Avenue of the Americas, New York, NY, USA
Charles Markello
11University of California at Santa Cruz Genomics Institute, 1156 High Street, Santa Cruz, CA, USA
Kishwar Shafin
11University of California at Santa Cruz Genomics Institute, 1156 High Street, Santa Cruz, CA, USA
Xin Zhou
12Department of Computer Science, Stanford University, Stanford, CA 94305, USA
Arend Sidow
13Departments of Pathology and of Genetics, Stanford University, Stanford CA 94305 USA
Vikas Bansal
14Department of Pediatrics, University of California San Diego, La Jolla CA 92093, USA
Alvaro Martinez Barrio
1510x Genomics, Pleasanton, CA 94588, USA
Ian T Fiddes
1510x Genomics, Pleasanton, CA 94588, USA
Arkarachai Fungtammasan
16DNAnexus, Inc., Mountain View, CA, 94040, USA
Chen-Shan Chin
16DNAnexus, Inc., Mountain View, CA, 94040, USA
Fritz J Sedlazeck
2Human Genome Sequencing Center, Baylor College of Medicine, One Baylor Plaza, Houston TX 77030, USA
Andrew Carroll
17Google Inc, 1600 Amphitheatre Pkwy, Mountain View, CA 94040, USA
Marc Salit
18Joint Initiative for Metrology in Biology, SLAC National Laboratory, Stanford, CA, USA
Justin M Zook
1Material Measurement Laboratory, National Institute of Standards and Technology, 100 Bureau Dr, MS8312, Gaithersburg, MD 20899, USA
Posted July 25, 2020.
Benchmarking challenging small variants with linked and long reads
Justin Wagner, Nathan D Olson, Lindsay Harris, Ziad Khan, Jesse Farek, Medhat Mahmoud, Ana Stankovic, Vladimir Kovacevic, Aaron M Wenger, William J Rowell, Chunlin Xiao, Byunggil Yoo, Neil Miller, Jeffrey A. Rosenfeld, Bohan Ni, Samantha Zarate, Melanie Kirsche, Sergey Aganezov, Michael Schatz, Giuseppe Narzisi, Marta Byrska-Bishop, Wayne Clarke, Uday S. Evani, Charles Markello, Kishwar Shafin, Xin Zhou, Arend Sidow, Vikas Bansal, Alvaro Martinez Barrio, Ian T Fiddes, Arkarachai Fungtammasan, Chen-Shan Chin, Fritz J Sedlazeck, Andrew Carroll, Marc Salit, Justin M Zook
bioRxiv 2020.07.24.212712; doi: https://doi.org/10.1101/2020.07.24.212712
Benchmarking challenging small variants with linked and long reads
Justin Wagner, Nathan D Olson, Lindsay Harris, Ziad Khan, Jesse Farek, Medhat Mahmoud, Ana Stankovic, Vladimir Kovacevic, Aaron M Wenger, William J Rowell, Chunlin Xiao, Byunggil Yoo, Neil Miller, Jeffrey A. Rosenfeld, Bohan Ni, Samantha Zarate, Melanie Kirsche, Sergey Aganezov, Michael Schatz, Giuseppe Narzisi, Marta Byrska-Bishop, Wayne Clarke, Uday S. Evani, Charles Markello, Kishwar Shafin, Xin Zhou, Arend Sidow, Vikas Bansal, Alvaro Martinez Barrio, Ian T Fiddes, Arkarachai Fungtammasan, Chen-Shan Chin, Fritz J Sedlazeck, Andrew Carroll, Marc Salit, Justin M Zook
bioRxiv 2020.07.24.212712; doi: https://doi.org/10.1101/2020.07.24.212712
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