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High-level correction of the sickle mutation amplified in vivo during erythroid differentiation

Wendy Magis, Mark A. DeWitt, Stacia K. Wyman, Jonathan T. Vu, Seok-Jin Heo, Shirley J Shao, Fiona Hennig, Zulema G. Romero, Beatriz Campo-Fernandez, Matthew McNeill, Garrett R. Rettig, Yongming Sun, Patrick J. Lau, Yu Wang, Mark A. Behlke, Donald B. Kohn, Dario Boffelli, Mark C. Walters, Jacob E. Corn, David I.K. Martin
doi: https://doi.org/10.1101/432716
Wendy Magis
1Children’s Hospital Oakland Research Institute, UCSF Benioff Children’s Hospital Oakland, Oakland, CA 94609, USA
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Mark A. DeWitt
2Innovative Genomics Institute, University of California, Berkeley, Berkeley, CA 94720, USA
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Stacia K. Wyman
2Innovative Genomics Institute, University of California, Berkeley, Berkeley, CA 94720, USA
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Jonathan T. Vu
2Innovative Genomics Institute, University of California, Berkeley, Berkeley, CA 94720, USA
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Seok-Jin Heo
1Children’s Hospital Oakland Research Institute, UCSF Benioff Children’s Hospital Oakland, Oakland, CA 94609, USA
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Shirley J Shao
2Innovative Genomics Institute, University of California, Berkeley, Berkeley, CA 94720, USA
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Fiona Hennig
1Children’s Hospital Oakland Research Institute, UCSF Benioff Children’s Hospital Oakland, Oakland, CA 94609, USA
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Zulema G. Romero
3Departments of Microbiology, Immunology, and Molecular Genetics; Pediatrics; and Molecular and Medical Pharmacology, University of California, Los Angeles, Los Angeles, CA 90095, USA
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Beatriz Campo-Fernandez
3Departments of Microbiology, Immunology, and Molecular Genetics; Pediatrics; and Molecular and Medical Pharmacology, University of California, Los Angeles, Los Angeles, CA 90095, USA
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Matthew McNeill
4Integrated DNA Technologies, Coralville, IA, USA
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Garrett R. Rettig
4Integrated DNA Technologies, Coralville, IA, USA
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Yongming Sun
5Integrated DNA Technologies, Redwood City, CA, USA
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Patrick J. Lau
5Integrated DNA Technologies, Redwood City, CA, USA
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Yu Wang
5Integrated DNA Technologies, Redwood City, CA, USA
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Mark A. Behlke
4Integrated DNA Technologies, Coralville, IA, USA
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Donald B. Kohn
3Departments of Microbiology, Immunology, and Molecular Genetics; Pediatrics; and Molecular and Medical Pharmacology, University of California, Los Angeles, Los Angeles, CA 90095, USA
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Dario Boffelli
1Children’s Hospital Oakland Research Institute, UCSF Benioff Children’s Hospital Oakland, Oakland, CA 94609, USA
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Mark C. Walters
1Children’s Hospital Oakland Research Institute, UCSF Benioff Children’s Hospital Oakland, Oakland, CA 94609, USA
6Blood and Marrow Transplant Program, Division of Hematology, UCSF Benioff Children’s Hospital Oakland, Oakland, CA 94609, USA
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  • For correspondence: dimartin@chori.org mwalters@mail.cho.org jcorn@berkeley.edu
Jacob E. Corn
2Innovative Genomics Institute, University of California, Berkeley, Berkeley, CA 94720, USA
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  • For correspondence: dimartin@chori.org mwalters@mail.cho.org jcorn@berkeley.edu
David I.K. Martin
1Children’s Hospital Oakland Research Institute, UCSF Benioff Children’s Hospital Oakland, Oakland, CA 94609, USA
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  • For correspondence: dimartin@chori.org mwalters@mail.cho.org jcorn@berkeley.edu
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ABSTRACT

Sickle Cell Disease (SCD), one of the world’s most common genetic disorders, causes anemia and progressive multiorgan damage that typically shortens lifespan by decades; currently there is no broadly applicable curative therapy. Here we show that Cas9 RNP-mediated gene editing with an ssDNA oligonucleotide donor yields markerless correction of the sickle mutation in more than 30% of long-term engrafting human hematopoietic stem cells (HSCs), using a selection-free protocol that is directly applicable to a clinical setting. We further find that in vivo erythroid differentiation markedly enriches for corrected ß-globin alleles. Adoption of a high-fidelity Cas9 variant demonstrates that this approach can yield efficient editing with almost no off-target events. These findings indicate that the sickle mutation can be corrected in human HSCs at curative levels with a streamlined protocol that is ready to be translated into a therapy.

ONE SENTENCE SUMMARY Cas9-mediated correction of the sickle mutation in human hematopoietic stem cells can be accomplished at curative levels.

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Posted January 08, 2019.
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High-level correction of the sickle mutation amplified in vivo during erythroid differentiation
Wendy Magis, Mark A. DeWitt, Stacia K. Wyman, Jonathan T. Vu, Seok-Jin Heo, Shirley J Shao, Fiona Hennig, Zulema G. Romero, Beatriz Campo-Fernandez, Matthew McNeill, Garrett R. Rettig, Yongming Sun, Patrick J. Lau, Yu Wang, Mark A. Behlke, Donald B. Kohn, Dario Boffelli, Mark C. Walters, Jacob E. Corn, David I.K. Martin
bioRxiv 432716; doi: https://doi.org/10.1101/432716
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High-level correction of the sickle mutation amplified in vivo during erythroid differentiation
Wendy Magis, Mark A. DeWitt, Stacia K. Wyman, Jonathan T. Vu, Seok-Jin Heo, Shirley J Shao, Fiona Hennig, Zulema G. Romero, Beatriz Campo-Fernandez, Matthew McNeill, Garrett R. Rettig, Yongming Sun, Patrick J. Lau, Yu Wang, Mark A. Behlke, Donald B. Kohn, Dario Boffelli, Mark C. Walters, Jacob E. Corn, David I.K. Martin
bioRxiv 432716; doi: https://doi.org/10.1101/432716

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