Skip to main content
bioRxiv
  • Home
  • About
  • Submit
  • ALERTS / RSS
Advanced Search
New Results

Multiplane Mesoscope reveals distinct cortical interactions following expectation violations

View ORCID ProfileNatalia Orlova, View ORCID ProfileDmitri Tsyboulski, View ORCID ProfileFarzaneh Najafi, Sam Seid, Sara Kivikas, India Kato, Fiona Griffin, Arielle Leon, Quinn L’Heureux, Kat North, Jackie Swapp, Chelsea Nayan, Nicole Hancock, Ruweida Ahmed, Emily Gelfand, Andrew Cho, Kyla Mace, Robert Howard, Linzy Casal, Sophie Lambert, View ORCID ProfileEric Kenji Lee, Shiella Caldejon, Xana Waughman, Allison Williford, View ORCID ProfileMarina Garrett, Doug Ollerenshaw, View ORCID ProfileShawn R. Olsen, View ORCID ProfilePeter Groblewski, View ORCID ProfileJérôme Lecoq, View ORCID ProfilePeter Saggau
doi: https://doi.org/10.1101/2020.10.06.328294
Natalia Orlova
1Allen Institute for Brain Science, Seattle, WA, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Natalia Orlova
  • For correspondence: nataliao@alleninstitute.org
Dmitri Tsyboulski
1Allen Institute for Brain Science, Seattle, WA, USA
2Janelia Research Campus, Ashburn, VA, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Dmitri Tsyboulski
Farzaneh Najafi
1Allen Institute for Brain Science, Seattle, WA, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Farzaneh Najafi
Sam Seid
1Allen Institute for Brain Science, Seattle, WA, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Sara Kivikas
1Allen Institute for Brain Science, Seattle, WA, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
India Kato
1Allen Institute for Brain Science, Seattle, WA, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Fiona Griffin
1Allen Institute for Brain Science, Seattle, WA, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Arielle Leon
1Allen Institute for Brain Science, Seattle, WA, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Quinn L’Heureux
1Allen Institute for Brain Science, Seattle, WA, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Kat North
1Allen Institute for Brain Science, Seattle, WA, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Jackie Swapp
1Allen Institute for Brain Science, Seattle, WA, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Chelsea Nayan
1Allen Institute for Brain Science, Seattle, WA, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Nicole Hancock
1Allen Institute for Brain Science, Seattle, WA, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Ruweida Ahmed
1Allen Institute for Brain Science, Seattle, WA, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Emily Gelfand
1Allen Institute for Brain Science, Seattle, WA, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Andrew Cho
1Allen Institute for Brain Science, Seattle, WA, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Kyla Mace
1Allen Institute for Brain Science, Seattle, WA, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Robert Howard
1Allen Institute for Brain Science, Seattle, WA, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Linzy Casal
1Allen Institute for Brain Science, Seattle, WA, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Sophie Lambert
1Allen Institute for Brain Science, Seattle, WA, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Eric Kenji Lee
1Allen Institute for Brain Science, Seattle, WA, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Eric Kenji Lee
Shiella Caldejon
1Allen Institute for Brain Science, Seattle, WA, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Xana Waughman
1Allen Institute for Brain Science, Seattle, WA, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Allison Williford
1Allen Institute for Brain Science, Seattle, WA, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Marina Garrett
1Allen Institute for Brain Science, Seattle, WA, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Marina Garrett
Doug Ollerenshaw
1Allen Institute for Brain Science, Seattle, WA, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Shawn R. Olsen
1Allen Institute for Brain Science, Seattle, WA, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Shawn R. Olsen
Peter Groblewski
1Allen Institute for Brain Science, Seattle, WA, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Peter Groblewski
Jérôme Lecoq
1Allen Institute for Brain Science, Seattle, WA, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Jérôme Lecoq
Peter Saggau
1Allen Institute for Brain Science, Seattle, WA, USA
3Baylor College of Medicine, Houston, TX, USA
4Italian Institute of Technology, Genoa, Italy
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Peter Saggau
  • Abstract
  • Full Text
  • Info/History
  • Metrics
  • Preview PDF
Loading

Abstract

Cortical columns interact through dynamic routing of neuronal activity. To monitor these interactions, we developed the Multiplane Mesoscope which combines three established microscopy technologies: time-division multiplexing, remote focusing, and random-access mesoscopy. The Multiplane Mesoscope allowed us to study cortical column interactions in excitatory and inhibitory subpopulations in behaving mice. We found that distinct cortical subnetworks represent expected and unexpected events, suggesting that expectation violations modify signal routing across cortical columns, and establishing the Multiplane Mesoscope as a unique platform to study signal routing.

Competing Interest Statement

The dual-beam add-on module (D.T., N.O., J.L and P.S.) intellectual property has been licensed to Thorlabs. Inc., by the Allen Institute.

Footnotes

  • Updated Acknowledgements; Updated Correspondence and Requests.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission.
Back to top
PreviousNext
Posted October 10, 2020.
Download PDF
Email

Thank you for your interest in spreading the word about bioRxiv.

NOTE: Your email address is requested solely to identify you as the sender of this article.

Enter multiple addresses on separate lines or separate them with commas.
Multiplane Mesoscope reveals distinct cortical interactions following expectation violations
(Your Name) has forwarded a page to you from bioRxiv
(Your Name) thought you would like to see this page from the bioRxiv website.
CAPTCHA
This question is for testing whether or not you are a human visitor and to prevent automated spam submissions.
Share
Multiplane Mesoscope reveals distinct cortical interactions following expectation violations
Natalia Orlova, Dmitri Tsyboulski, Farzaneh Najafi, Sam Seid, Sara Kivikas, India Kato, Fiona Griffin, Arielle Leon, Quinn L’Heureux, Kat North, Jackie Swapp, Chelsea Nayan, Nicole Hancock, Ruweida Ahmed, Emily Gelfand, Andrew Cho, Kyla Mace, Robert Howard, Linzy Casal, Sophie Lambert, Eric Kenji Lee, Shiella Caldejon, Xana Waughman, Allison Williford, Marina Garrett, Doug Ollerenshaw, Shawn R. Olsen, Peter Groblewski, Jérôme Lecoq, Peter Saggau
bioRxiv 2020.10.06.328294; doi: https://doi.org/10.1101/2020.10.06.328294
Reddit logo Twitter logo Facebook logo LinkedIn logo Mendeley logo
Citation Tools
Multiplane Mesoscope reveals distinct cortical interactions following expectation violations
Natalia Orlova, Dmitri Tsyboulski, Farzaneh Najafi, Sam Seid, Sara Kivikas, India Kato, Fiona Griffin, Arielle Leon, Quinn L’Heureux, Kat North, Jackie Swapp, Chelsea Nayan, Nicole Hancock, Ruweida Ahmed, Emily Gelfand, Andrew Cho, Kyla Mace, Robert Howard, Linzy Casal, Sophie Lambert, Eric Kenji Lee, Shiella Caldejon, Xana Waughman, Allison Williford, Marina Garrett, Doug Ollerenshaw, Shawn R. Olsen, Peter Groblewski, Jérôme Lecoq, Peter Saggau
bioRxiv 2020.10.06.328294; doi: https://doi.org/10.1101/2020.10.06.328294

Citation Manager Formats

  • BibTeX
  • Bookends
  • EasyBib
  • EndNote (tagged)
  • EndNote 8 (xml)
  • Medlars
  • Mendeley
  • Papers
  • RefWorks Tagged
  • Ref Manager
  • RIS
  • Zotero
  • Tweet Widget
  • Facebook Like
  • Google Plus One

Subject Area

  • Neuroscience
Subject Areas
All Articles
  • Animal Behavior and Cognition (4228)
  • Biochemistry (9107)
  • Bioengineering (6751)
  • Bioinformatics (23944)
  • Biophysics (12089)
  • Cancer Biology (9495)
  • Cell Biology (13741)
  • Clinical Trials (138)
  • Developmental Biology (7616)
  • Ecology (11661)
  • Epidemiology (2066)
  • Evolutionary Biology (15479)
  • Genetics (10618)
  • Genomics (14296)
  • Immunology (9463)
  • Microbiology (22792)
  • Molecular Biology (9078)
  • Neuroscience (48890)
  • Paleontology (355)
  • Pathology (1479)
  • Pharmacology and Toxicology (2565)
  • Physiology (3823)
  • Plant Biology (8308)
  • Scientific Communication and Education (1467)
  • Synthetic Biology (2290)
  • Systems Biology (6172)
  • Zoology (1297)