Squeegee: de-novo identification of reagent and laboratory induced microbial contaminants in low biomass microbiomes

Yunxi Liu; R. A. Leo Elworth; Michael D. Jochum; Kjersti M. Aagaard; Todd J. Treangen

doi:10.1101/2021.05.06.442815

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Squeegee: de-novo identification of reagent and laboratory induced microbial contaminants in low biomass microbiomes

View ORCID ProfileYunxi Liu, View ORCID ProfileR. A. Leo Elworth, View ORCID ProfileMichael D. Jochum, View ORCID ProfileKjersti M. Aagaard, View ORCID ProfileTodd J. Treangen

doi: https://doi.org/10.1101/2021.05.06.442815

Yunxi Liu

1Rice University, Department of Computer Science, Houston, 77005, USA

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R. A. Leo Elworth

1Rice University, Department of Computer Science, Houston, 77005, USA

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Michael D. Jochum

2Department of Obstetrics and Gynecology, Baylor College of Medicine and Texas Children’s Hospital, Houston, Texas 77030, USA

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Kjersti M. Aagaard

2Department of Obstetrics and Gynecology, Baylor College of Medicine and Texas Children’s Hospital, Houston, Texas 77030, USA

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Todd J. Treangen

1Rice University, Department of Computer Science, Houston, 77005, USA

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For correspondence: treangen@rice.edu

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Posted May 07, 2021.

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Squeegee: de-novo identification of reagent and laboratory induced microbial contaminants in low biomass microbiomes

Yunxi Liu, R. A. Leo Elworth, Michael D. Jochum, Kjersti M. Aagaard, Todd J. Treangen

bioRxiv 2021.05.06.442815; doi: https://doi.org/10.1101/2021.05.06.442815

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Squeegee: de-novo identification of reagent and laboratory induced microbial contaminants in low biomass microbiomes

Yunxi Liu, R. A. Leo Elworth, Michael D. Jochum, Kjersti M. Aagaard, Todd J. Treangen

bioRxiv 2021.05.06.442815; doi: https://doi.org/10.1101/2021.05.06.442815

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