Scalable microbial strain inference in metagenomic data using StrainFacts

Byron J. Smith; Xiangpeng Li; Zhou Jason Shi; Adam Abate; Katherine S. Pollard

doi:10.1101/2022.02.01.478746

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Scalable microbial strain inference in metagenomic data using StrainFacts

View ORCID ProfileByron J. Smith, Xiangpeng Li, Zhou Jason Shi, View ORCID ProfileAdam Abate, View ORCID ProfileKatherine S. Pollard

doi: https://doi.org/10.1101/2022.02.01.478746

Byron J. Smith

AThe Gladstone Institute of Data Science and Biotechnology, San Francisco, CA

BDepartment of Epidemiology and Biostatistics, University of California, San Francisco, CA

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ORCID record for Byron J. Smith

Xiangpeng Li

CDepartment of Bioengineering and Therapeutic Sciences, University of California, San Francisco, CA

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Zhou Jason Shi

AThe Gladstone Institute of Data Science and Biotechnology, San Francisco, CA

DChan-Zuckerberg Biohub, San Francisco, CA

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Adam Abate

CDepartment of Bioengineering and Therapeutic Sciences, University of California, San Francisco, CA

DChan-Zuckerberg Biohub, San Francisco, CA

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ORCID record for Adam Abate

Katherine S. Pollard

AThe Gladstone Institute of Data Science and Biotechnology, San Francisco, CA

BDepartment of Epidemiology and Biostatistics, University of California, San Francisco, CA

DChan-Zuckerberg Biohub, San Francisco, CA

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ORCID record for Katherine S. Pollard
For correspondence: katherine.pollard@gladstone.ucsf.edu

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https://www.ncbi.nlm.nih.gov/bioproject/PRJNA737472

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Posted April 09, 2022.

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Scalable microbial strain inference in metagenomic data using StrainFacts

Byron J. Smith, Xiangpeng Li, Zhou Jason Shi, Adam Abate, Katherine S. Pollard

bioRxiv 2022.02.01.478746; doi: https://doi.org/10.1101/2022.02.01.478746

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Scalable microbial strain inference in metagenomic data using StrainFacts

Byron J. Smith, Xiangpeng Li, Zhou Jason Shi, Adam Abate, Katherine S. Pollard

bioRxiv 2022.02.01.478746; doi: https://doi.org/10.1101/2022.02.01.478746

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