Predicting A/B compartments from histone modifications using deep learning

Suchen Zheng; Nitya Thakkar; Hannah L. Harris; Megan Zhang; Susanna Liu; Mark Gerstein; Erez Lieberman-Aiden; M. Jordan Rowley; William Stafford Noble; Gamze Gürsoy; Ritambhara Singh

doi:10.1101/2022.04.19.488754

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Predicting A/B compartments from histone modifications using deep learning

Suchen Zheng, Nitya Thakkar, Hannah L. Harris, Megan Zhang, Susanna Liu, Mark Gerstein, Erez Lieberman-Aiden, M. Jordan Rowley, William Stafford Noble, Gamze Gürsoy, Ritambhara Singh

doi: https://doi.org/10.1101/2022.04.19.488754

Suchen Zheng

1Department of Computer Science, Brown University

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Nitya Thakkar

1Department of Computer Science, Brown University

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Hannah L. Harris

2Department of Genetics, Cell Biology and Anatomy, University of Nebraska Medical Center

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Megan Zhang

5Data Science and Statistics, Yale University

6Molecular, Cellular, and Developmental Biology, Yale University

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Susanna Liu

5Data Science and Statistics, Yale University

6Molecular, Cellular, and Developmental Biology, Yale University

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Mark Gerstein

3Computational Biology and Bioinformatics, Yale University

4Molecular Biophysics & Biochemistry, Yale University

5Data Science and Statistics, Yale University

7Computer Science, Yale University

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Erez Lieberman-Aiden

8Department of Genetics, Baylor College of Medicine

9Department of Computer Science, Rice University

10Computational and Applied Mathematics, Rice University

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M. Jordan Rowley

2Department of Genetics, Cell Biology and Anatomy, University of Nebraska Medical Center

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William Stafford Noble

11Department of Genome Sciences, University of Washington

12Paul G. Allen School of Computer Science and Engineering, University of Washington

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Gamze Gürsoy

13Department of Biomedical Informatics, Columbia University

14New York Genome Center

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For correspondence: ritambhara@brown.edu

Ritambhara Singh

1Department of Computer Science, Brown University

15Center for Computational Molecular Biology, Brown University

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For correspondence: ritambhara@brown.edu

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Predicting A/B compartments from histone modifications using deep learning

Suchen Zheng, Nitya Thakkar, Hannah L. Harris, Megan Zhang, Susanna Liu, Mark Gerstein, Erez Lieberman-Aiden, M. Jordan Rowley, William Stafford Noble, Gamze Gürsoy, Ritambhara Singh

bioRxiv 2022.04.19.488754; doi: https://doi.org/10.1101/2022.04.19.488754

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Predicting A/B compartments from histone modifications using deep learning

Suchen Zheng, Nitya Thakkar, Hannah L. Harris, Megan Zhang, Susanna Liu, Mark Gerstein, Erez Lieberman-Aiden, M. Jordan Rowley, William Stafford Noble, Gamze Gürsoy, Ritambhara Singh

bioRxiv 2022.04.19.488754; doi: https://doi.org/10.1101/2022.04.19.488754

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