iPHoP: an integrated machine-learning framework to maximize host prediction for metagenome-assembled virus genomes

Simon Roux; Antonio Pedro Camargo; Felipe H. Coutinho; Shareef M. Dabdoub; Bas E. Dutilh; Stephen Nayfach; Andrew Tritt

doi:10.1101/2022.07.28.501908

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iPHoP: an integrated machine-learning framework to maximize host prediction for metagenome-assembled virus genomes

View ORCID ProfileSimon Roux, View ORCID ProfileAntonio Pedro Camargo, Felipe H. Coutinho, Shareef M. Dabdoub, Bas E. Dutilh, View ORCID ProfileStephen Nayfach, Andrew Tritt

doi: https://doi.org/10.1101/2022.07.28.501908

Simon Roux

1DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA

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For correspondence: [email protected]

Antonio Pedro Camargo

1DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA

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Felipe H. Coutinho

2Instituto de Ciencias del Mar (ICM-CSIC), Barcelona, Spain

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Shareef M. Dabdoub

3Division of Biostatistics and Computational Biology, University of Iowa College of Dentistry, Iowa City, IA, USA

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Bas E. Dutilh

4Institute of Biodiversity, Faculty of Biological Sciences, Cluster of Excellence Balance of the Microverse, Friedrich Schiller University, Rosalind Franklin Strasse 1, 07743, Jena, Germany

6Theoretical Biology and Bioinformatics, Science for Life, Utrecht University, Padualaan 8, 3584 CH, Utrecht, The Netherlands

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Stephen Nayfach

1DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA

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Andrew Tritt

6Theoretical Biology and Bioinformatics, Science for Life, Utrecht University, Padualaan 8, 3584 CH, Utrecht, The Netherlands

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Posted July 28, 2022.

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iPHoP: an integrated machine-learning framework to maximize host prediction for metagenome-assembled virus genomes

Simon Roux, Antonio Pedro Camargo, Felipe H. Coutinho, Shareef M. Dabdoub, Bas E. Dutilh, Stephen Nayfach, Andrew Tritt

bioRxiv 2022.07.28.501908; doi: https://doi.org/10.1101/2022.07.28.501908

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iPHoP: an integrated machine-learning framework to maximize host prediction for metagenome-assembled virus genomes

Simon Roux, Antonio Pedro Camargo, Felipe H. Coutinho, Shareef M. Dabdoub, Bas E. Dutilh, Stephen Nayfach, Andrew Tritt

bioRxiv 2022.07.28.501908; doi: https://doi.org/10.1101/2022.07.28.501908

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