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Efficient minimizer orders for large values of k using minimum decycling sets

David Pellow, Lianrong Pu, Baris Ekim, Lior Kotlar, Bonnie Berger, Ron Shamir, View ORCID ProfileYaron Orenstein
doi: https://doi.org/10.1101/2022.10.18.512682
David Pellow
1Blavatnik School of Computer Science, Tel-Aviv University, Israel
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Lianrong Pu
1Blavatnik School of Computer Science, Tel-Aviv University, Israel
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Baris Ekim
2Computer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, Cambridge, MA
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Lior Kotlar
3Department of Computer Science, Ben-Gurion University, Israel
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Bonnie Berger
2Computer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, Cambridge, MA
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Ron Shamir
1Blavatnik School of Computer Science, Tel-Aviv University, Israel
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Yaron Orenstein
4Department of Computer Science, Bar-Ilan University, Israel
5The Mina and Everard Goodman Faculty of Life Sciences, Bar-Ilan University, Israel
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  • ORCID record for Yaron Orenstein
  • For correspondence: yaron.orenstein@gmail.com
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  • https://github.com/OrensteinLab/DecyclingSetBasedMinimizerOrder

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Posted October 21, 2022.
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Efficient minimizer orders for large values of k using minimum decycling sets
David Pellow, Lianrong Pu, Baris Ekim, Lior Kotlar, Bonnie Berger, Ron Shamir, Yaron Orenstein
bioRxiv 2022.10.18.512682; doi: https://doi.org/10.1101/2022.10.18.512682
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Efficient minimizer orders for large values of k using minimum decycling sets
David Pellow, Lianrong Pu, Baris Ekim, Lior Kotlar, Bonnie Berger, Ron Shamir, Yaron Orenstein
bioRxiv 2022.10.18.512682; doi: https://doi.org/10.1101/2022.10.18.512682

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