kmindex and ORA: indexing and real-time user-friendly queries in terabyte-sized complex genomic datasets

Téo Lemane; Nolan Lezzoche; Julien Lecubin; Eric Pelletier; Magali Lescot; Rayan Chikhi; Pierre Peterlongo

doi:10.1101/2023.05.31.543043

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kmindex and ORA: indexing and real-time user-friendly queries in terabyte-sized complex genomic datasets

Téo Lemane, Nolan Lezzoche, View ORCID ProfileJulien Lecubin, View ORCID ProfileEric Pelletier, View ORCID ProfileMagali Lescot, View ORCID ProfileRayan Chikhi, View ORCID ProfilePierre Peterlongo

doi: https://doi.org/10.1101/2023.05.31.543043

Téo Lemane

1Univ. Rennes, Inria, CNRS, IRISA - UMR 6074, Rennes, F-35000 France

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For correspondence: teo.lemane@genoscope.cns.fr pierre.peterlongo@inria.fr

Nolan Lezzoche

2Aix-Marseille Université, Université de Toulon, IRD, CNRS, Mediterranean Institute of Oceanography (MIO), UM 110, Marseille, France

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Julien Lecubin

3SIP, OSU PYTHEAS, Marseille, France

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ORCID record for Julien Lecubin

Eric Pelletier

4Génomique Métabolique, Genoscope, Institut de Biologie François Jacob, CEA, CNRS, Univ. Evry, Université Paris-Saclay, Evry, France

5Research Federation for the Study of Global Ocean Systems Ecology and Evolution, FR2022/Tara Oceans GO-SEE, CNRS, Paris, France

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ORCID record for Eric Pelletier

Magali Lescot

2Aix-Marseille Université, Université de Toulon, IRD, CNRS, Mediterranean Institute of Oceanography (MIO), UM 110, Marseille, France

5Research Federation for the Study of Global Ocean Systems Ecology and Evolution, FR2022/Tara Oceans GO-SEE, CNRS, Paris, France

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Rayan Chikhi

6Institut Pasteur, Université Paris Cité, G5 Sequence Bioinformatics, Paris, F-75015, France

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ORCID record for Rayan Chikhi

Pierre Peterlongo

1Univ. Rennes, Inria, CNRS, IRISA - UMR 6074, Rennes, F-35000 France

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ORCID record for Pierre Peterlongo
For correspondence: teo.lemane@genoscope.cns.fr pierre.peterlongo@inria.fr

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Posted October 31, 2023.

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kmindex and ORA: indexing and real-time user-friendly queries in terabyte-sized complex genomic datasets

Téo Lemane, Nolan Lezzoche, Julien Lecubin, Eric Pelletier, Magali Lescot, Rayan Chikhi, Pierre Peterlongo

bioRxiv 2023.05.31.543043; doi: https://doi.org/10.1101/2023.05.31.543043

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kmindex and ORA: indexing and real-time user-friendly queries in terabyte-sized complex genomic datasets

Téo Lemane, Nolan Lezzoche, Julien Lecubin, Eric Pelletier, Magali Lescot, Rayan Chikhi, Pierre Peterlongo

bioRxiv 2023.05.31.543043; doi: https://doi.org/10.1101/2023.05.31.543043

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