Accurate estimation of intraspecific microbial gene content variation in metagenomic data with MIDAS v3 and StrainPGC

Byron J. Smith; Chunyu Zhao; Veronika Dubinkina; Xiaofan Jin; Jacqueline Moltzau-Anderson; Katherine S. Pollard

doi:10.1101/2024.04.10.588779

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Accurate estimation of intraspecific microbial gene content variation in metagenomic data with MIDAS v3 and StrainPGC

View ORCID ProfileByron J. Smith, View ORCID ProfileChunyu Zhao, View ORCID ProfileVeronika Dubinkina, View ORCID ProfileXiaofan Jin, View ORCID ProfileJacqueline Moltzau-Anderson, View ORCID ProfileKatherine S. Pollard

doi: https://doi.org/10.1101/2024.04.10.588779

Byron J. Smith

1Gladstone Institute for Data Science and Biotechnology, San Francisco, USA

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Chunyu Zhao

2Department of Gastroenterology, University of California, San Francisco, USA

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Veronika Dubinkina

1Gladstone Institute for Data Science and Biotechnology, San Francisco, USA

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Xiaofan Jin

1Gladstone Institute for Data Science and Biotechnology, San Francisco, USA

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Jacqueline Moltzau-Anderson

2Department of Gastroenterology, University of California, San Francisco, USA

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Katherine S. Pollard

1Gladstone Institute for Data Science and Biotechnology, San Francisco, USA

3Chan Zuckerberg Biohub San Francisco, San Francisco, USA

4Department of Epidemiology and Biostatistics, University of California, San Francisco, USA

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Posted April 10, 2024.

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Accurate estimation of intraspecific microbial gene content variation in metagenomic data with MIDAS v3 and StrainPGC

Byron J. Smith, Chunyu Zhao, Veronika Dubinkina, Xiaofan Jin, Jacqueline Moltzau-Anderson, Katherine S. Pollard

bioRxiv 2024.04.10.588779; doi: https://doi.org/10.1101/2024.04.10.588779

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Accurate estimation of intraspecific microbial gene content variation in metagenomic data with MIDAS v3 and StrainPGC

Byron J. Smith, Chunyu Zhao, Veronika Dubinkina, Xiaofan Jin, Jacqueline Moltzau-Anderson, Katherine S. Pollard

bioRxiv 2024.04.10.588779; doi: https://doi.org/10.1101/2024.04.10.588779

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