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History
- March 7, 2018.
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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY 4.0 International license.
Author Information
- Daniel McDonaldaa,%,
- Embriette Hydea,%,
- Justine W. Debeliusa,
- James T. Mortona,
- Antonio Gonzaleza,
- Gail Ackermanna,
- Alexander A. Aksenovb,c,
- Bahar Behsazd,
- Caitriona Brennana,
- Yingfeng Chene,
- Lindsay DeRight Goldasicha,
- Pieter C. Dorresteinb,c,
- Robert R. Dunnf,
- Ashkaan K. Fahimipourg,
- James Gaffneya,
- Jack A Gilberth,i,j,k,
- Grant Gogula,
- Jessica L. Greeng,
- Philip Hugenholtzl,
- Greg Humphreya,
- Curtis Huttenhowerm,n,
- Matthew A. Jacksono,
- Stefan Janssena,
- Dilip V. Jestep,q,
- Lingjing Jianga,
- Scott T. Kelley14,
- Dan Knightsr,s,
- Tomasz Koscioleka,
- Joshua Ladaut,
- Jeff Leachu,
- Clarisse Marotza,
- Dmitry Meleshkov,
- Alexey V. Melnikb,c,
- Jessica L. Metcalfw,
- Hosein Mohimanix,
- Emmanuel Montassierr,y,
- Jose Navas-Molinaa,
- Tanya T. Nguyenp,q,
- Shyamal Peddadaz,
- Pavel Pevznerb,d,aa,
- Katherine S. Pollardt,
- Gholamali Rahnavardm,n,
- Adam Robbins-Piankabb,
- Naseer Sangwanj,
- Joshua Shorensteina,
- Larry Smarrd,aa,cc,
- Se Jin Songa,
- Timothy Spectoro,
- Austin D. Swaffordaa,
- Varykina G. Thackraydd,
- Luke R. Thompsonee,
- Anupriya Tripathia,
- Yoshiki Vazquez-Baezaa,
- Alison Vrbanaca,
- Paul Wischmeyerff,gg,
- Elaine Wolfea,
- Qiyun Zhua,
- The American Gut Consortium and
- Rob Knighta,d,aa,#
- aDepartment of Pediatrics, University of California San Diego, La Jolla, CA, USA
- bCollaborative Mass Spectrometry Innovation Center, University of California, San Diego, La Jolla, CA, USA
- cSkaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, La Jolla, CA, USA
- dDepartment of Computer Science and Engineering, University of California, San Diego, La Jolla, CA, USA
- eDepartment of Biology, San Diego State University, San Diego, CA, USA
- fDepartment of Applied Ecology, North Carolina State University, Raleigh, NC, USA
- gBiology and the Built Environment Center; University of Oregon, Eugene, OR, USA
- hDepartment of Surgery, University of Chicago, Chicago, IL, USA
- iInstitute for Genomic and Systems Biology, University of Chicago, Chicago, IL, USA
- jDepartment of Biosciences, Argonne National Laboratory, Chicago, IL, USA
- kMarine Biology Laboratory, University of Chicago, Chicago, IL, USA
- lAustralian Centre for Ecogenomics, School of Chemistry and Molecular Biosciences, The University of Queensland, Brisbane, QLD, Australia
- mHarvard T. H. Chan School of Public Health, Boston, MA, USA
- nThe Broad Institute of MIT and Harvard, Boston, MA, USA
- oDepartment of Twin Research and Genetic Epidemiology, King’s College London, London, UK
- pDepartments of Psychiatry and Neurosciences, University of California San Diego, La Jolla, CA, USA
- qSam and Rose Stein Institute for Research on Aging, and Center for Healthy Aging, University of California San Diego, La Jolla, CA, USA
- rDepartment of Computer Science and Engineering, University of Minnesota, Minneapolis, MN, USA
- sBiotechnology Institute, University of Minnesota, Minneapolis, MN, USA
- tThe Gladstone Institutes, University of California, San Francisco, CA, USA
- uHuman Food Project, Terlingua, TX, USA
- vSt. Petersburg State University, Center for Algorithmic Biotechnology, Saint Petersburg, Russia
- wDepartment of Animal Science, Colorado State University, Fort Collins, CO, USA
- xDepartment of Computational Biology, Carnegie Mellon University, Pittsburgh, PA, USA
- yUniversité de Nantes, Microbiotas Hosts Antibiotics and Bacterial Resistances (MiHAR), Nantes, France
- zDepartment of Biostatistics, University of Pittsburgh, Pittsburgh, PA, USA
- aaCenter for Microbiome Innovation, University of California, San Diego, La Jolla, CA, USA
- bbDepartment of Computer Science, University of Colorado Boulder, Boulder, Colorado, USA
- ccCalifornia Institute for Telecommunications and Information Technology (Calit2), University of California San Diego, La Jolla, CA, USA
- ddDepartment of Reproductive Medicine, University of California San Diego, La Jolla, CA, USA
- eeSouthwest Fisheries Science Center, National Oceanic and Atmospheric Administration, La Jolla, CA, USA
- ffDepartment of Anesthesiology and Surgery, Duke University School of Medicine, Durham, NC, USA
- ggDuke Clinical Research Institute, Duke University School of Medicine, Durham, NC, USA
- ↵#Address correspondence to Rob Knight, robknight{at}ucsd.edu
↵% D.M. and E.H. contributed equally to this work.