User profiles for Jan Mathony

Jan Mathony

TU Darmstadt
Verified email at tu-darmstadt.de
Cited by 116

Enlightening allostery: designing switchable proteins by photoreceptor fusion

J Mathony, D Niopek - Advanced Biology, 2021 - Wiley Online Library
Optogenetics harnesses natural photoreceptors to non‐invasively control selected processes
in cells with previously unmet spatiotemporal precision. Linking the activity of a protein of …

Optogenetic control of Neisseria meningitidis Cas9 genome editing using an engineered, light-switchable anti-CRISPR protein

MD Hoffmann, J Mathony… - Nucleic acids …, 2021 - academic.oup.com
Optogenetic control of CRISPR–Cas9 systems has significantly improved our ability to perform
genome perturbations in living cells with high precision in time and space. As new Cas …

Transcriptomics-inferred dynamics of SARS-CoV-2 interactions with host epithelial cells

L Adam, M Stanifer, F Springer, J Mathony, M Brune… - Science …, 2023 - science.org
Virus-host interactions can reveal potentially effective and selective therapeutic targets for
treating infection. Here, we performed an integrated analysis of the dynamics of virus …

Dissecting the Determinants of Domain Insertion Tolerance and Allostery in Proteins

J Mathony, S Aschenbrenner, P Becker… - Advanced …, 2023 - Wiley Online Library
Abstract Domain insertion engineering is a promising approach to recombine the functions
of evolutionarily unrelated proteins. Insertion of light‐switchable receptor domains into a …

Computational design of anti-CRISPR proteins with improved inhibition potency

J Mathony, Z Harteveld, C Schmelas… - Nature chemical …, 2020 - nature.com
Anti-CRISPR (Acr) proteins are powerful tools to control CRISPR–Cas technologies. However,
the available Acr repertoire is limited to naturally occurring variants. Here, we applied …

Leveraging implicit knowledge in neural networks for functional dissection and engineering of proteins

…, L Adam, C Gandor, M Klein, J Mathony… - Nature Machine …, 2019 - nature.com
Proteins are nature’s most versatile molecular machines. Deep neural networks trained on
large protein datasets have recently been used to tackle the unmet complexity of protein …

Optogenetics and CRISPR: a new relationship built to last

J Mathony, MD Hoffmann, D Niopek - Photoswitching Proteins: Methods …, 2020 - Springer
Since the breakthrough discoveries that CRISPR-Cas9 nucleases can be easily programmed
and employed to induce targeted double-strand breaks in mammalian cells, the gene …

A modular toolbox for the optogenetic deactivation of transcription

…, B Correia, J Graeff, D Niopek, J Mathony - bioRxiv, 2023 - biorxiv.org
Light-controlled transcriptional activation is a commonly used optogenetic strategy that
allows researchers to regulate gene expression with high spatiotemporal precision. The vast …

A deep mutational scanning platform to characterize the fitness landscape of anti-CRISPR proteins

T Stadelmann, D Heid, M Jendrusch, J Mathony… - bioRxiv, 2021 - biorxiv.org
Deep mutational scanning is a powerful method to explore the mutational fitness landscape
of proteins. Its adaptation to anti-CRISPR proteins, which are natural CRISPR-Cas inhibitors …

Dynamics of SARS-CoV-2 host cell interactions inferred from transcriptome analyses

L Adam, M Stanifer, F Springer, J Mathony, C Di Ponzio… - bioRxiv, 2021 - biorxiv.org
The worldwide spread of severe acute respiratory syndrome-related coronavirus-2 (SARS-CoV-2)
caused an urgent need for an in-depth understanding of interactions between the …