User profiles for Jan Mathony
Jan MathonyTU Darmstadt Verified email at tu-darmstadt.de Cited by 116 |
Enlightening allostery: designing switchable proteins by photoreceptor fusion
Optogenetics harnesses natural photoreceptors to non‐invasively control selected processes
in cells with previously unmet spatiotemporal precision. Linking the activity of a protein of …
in cells with previously unmet spatiotemporal precision. Linking the activity of a protein of …
Optogenetic control of Neisseria meningitidis Cas9 genome editing using an engineered, light-switchable anti-CRISPR protein
MD Hoffmann, J Mathony… - Nucleic acids …, 2021 - academic.oup.com
Optogenetic control of CRISPR–Cas9 systems has significantly improved our ability to perform
genome perturbations in living cells with high precision in time and space. As new Cas …
genome perturbations in living cells with high precision in time and space. As new Cas …
Transcriptomics-inferred dynamics of SARS-CoV-2 interactions with host epithelial cells
Virus-host interactions can reveal potentially effective and selective therapeutic targets for
treating infection. Here, we performed an integrated analysis of the dynamics of virus …
treating infection. Here, we performed an integrated analysis of the dynamics of virus …
Dissecting the Determinants of Domain Insertion Tolerance and Allostery in Proteins
J Mathony, S Aschenbrenner, P Becker… - Advanced …, 2023 - Wiley Online Library
Abstract Domain insertion engineering is a promising approach to recombine the functions
of evolutionarily unrelated proteins. Insertion of light‐switchable receptor domains into a …
of evolutionarily unrelated proteins. Insertion of light‐switchable receptor domains into a …
Computational design of anti-CRISPR proteins with improved inhibition potency
J Mathony, Z Harteveld, C Schmelas… - Nature chemical …, 2020 - nature.com
Anti-CRISPR (Acr) proteins are powerful tools to control CRISPR–Cas technologies. However,
the available Acr repertoire is limited to naturally occurring variants. Here, we applied …
the available Acr repertoire is limited to naturally occurring variants. Here, we applied …
Leveraging implicit knowledge in neural networks for functional dissection and engineering of proteins
…, L Adam, C Gandor, M Klein, J Mathony… - Nature Machine …, 2019 - nature.com
Proteins are nature’s most versatile molecular machines. Deep neural networks trained on
large protein datasets have recently been used to tackle the unmet complexity of protein …
large protein datasets have recently been used to tackle the unmet complexity of protein …
Optogenetics and CRISPR: a new relationship built to last
Since the breakthrough discoveries that CRISPR-Cas9 nucleases can be easily programmed
and employed to induce targeted double-strand breaks in mammalian cells, the gene …
and employed to induce targeted double-strand breaks in mammalian cells, the gene …
A modular toolbox for the optogenetic deactivation of transcription
Light-controlled transcriptional activation is a commonly used optogenetic strategy that
allows researchers to regulate gene expression with high spatiotemporal precision. The vast …
allows researchers to regulate gene expression with high spatiotemporal precision. The vast …
A deep mutational scanning platform to characterize the fitness landscape of anti-CRISPR proteins
Deep mutational scanning is a powerful method to explore the mutational fitness landscape
of proteins. Its adaptation to anti-CRISPR proteins, which are natural CRISPR-Cas inhibitors …
of proteins. Its adaptation to anti-CRISPR proteins, which are natural CRISPR-Cas inhibitors …
Dynamics of SARS-CoV-2 host cell interactions inferred from transcriptome analyses
The worldwide spread of severe acute respiratory syndrome-related coronavirus-2 (SARS-CoV-2)
caused an urgent need for an in-depth understanding of interactions between the …
caused an urgent need for an in-depth understanding of interactions between the …