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Metabolic engineering of Escherichia coli for optimized biosynthesis of nicotinamide mononucleotide, a noncanonical redox cofactor

William B. Black, Derek Aspacio, Danielle Bever, Edward King, Linyue Zhang, View ORCID ProfileHan Li
doi: https://doi.org/10.1101/2020.05.11.089011
William B. Black
1Departments of Chemical and Biomolecular Engineering, University of California, Irvine
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Derek Aspacio
1Departments of Chemical and Biomolecular Engineering, University of California, Irvine
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Danielle Bever
1Departments of Chemical and Biomolecular Engineering, University of California, Irvine
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Edward King
2Molecular Biology and Biochemistry, University of California, Irvine
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Linyue Zhang
1Departments of Chemical and Biomolecular Engineering, University of California, Irvine
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Han Li
1Departments of Chemical and Biomolecular Engineering, University of California, Irvine
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  • ORCID record for Han Li
  • For correspondence: hanl5@uci.edu
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Abstract

Background Noncanonical redox cofactors are emerging as important tools in cell-free biosynthesis to increase the economic viability, to enable exquisite control, and to expand the range of chemistries accessible. However, these noncanonical redox cofactors need to be biologically synthesized to achieve full integration with renewable biomanufacturing processes.

Results In this work, we engineered Escherichia coli cells to biosynthesize the noncanonical cofactor nicotinamide mononucleotide (NMN+), which has been efficiently used in cell-free biosynthesis. First, we developed a growth-based screening platform to identify effective NMN+ biosynthetic pathways in E. coli. Second, we explored various pathway combinations and host gene disruption to achieve an intracellular level of ~1.5 mM NMN+, a 130-fold increase over the cell’s basal level, in the best strain, which features a previously uncharacterized nicotinamide phosphoribosyltransferase (NadV) from Ralstonia solanacearum. Last, we revealed mechanisms through which NMN+ accumulation impacts E. coli cell fitness, which sheds light on future work aiming to improve the production of this noncanonical redox cofactor.

Conclusion These results further the understanding of effective production and integration of NMN+ into E. coli. This may enable the implementation of NMN+-directed biocatalysis without the need for exogenous cofactor supply.

Competing Interest Statement

The authors have declared no competing interest.

  • Abbreviations

    NAD+
    nicotinamide adenine dinucleotide
    NADP+
    nicotinamide adenine dinucleotide phosphate
    P2NA+
    3-carbomoyl-1-phenethylpyridin-1-ium chloride
    NMN+
    nicotinamide mononucleotide
    NadV
    nicotinamide phosphoribosyltransferases
    NadE*
    nicotinamide mononucleotide synthase
    PncC
    nicotinamide mononucleotide
    NaMN+
    nicotinic acid mononucleotide
    NR
    nicotinamide riboside
    PnuC
    nicotinamide riboside transporter
    PnuC*
    mutant nicotinamide riboside transporter
    Nrk1
    nicotinamide riboside kinase from Saccharomyces cerevisiae
    NadR
    nicotinamide riboside kinase (Salmonella enterica)
    NA
    nicotinamide
    LC-MS
    liquid chromatography-mass spectrometry
    NaAD
    nicotinic acid adenine dinucleotide
    PCR
    polymerase chain reaction
    IPTG
    isopropyl-β-D-thiogalactopyranoside
    r.p.m.
    rotations per minute
  • Copyright 
    The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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    Posted May 13, 2020.
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    Metabolic engineering of Escherichia coli for optimized biosynthesis of nicotinamide mononucleotide, a noncanonical redox cofactor
    William B. Black, Derek Aspacio, Danielle Bever, Edward King, Linyue Zhang, Han Li
    bioRxiv 2020.05.11.089011; doi: https://doi.org/10.1101/2020.05.11.089011
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    Metabolic engineering of Escherichia coli for optimized biosynthesis of nicotinamide mononucleotide, a noncanonical redox cofactor
    William B. Black, Derek Aspacio, Danielle Bever, Edward King, Linyue Zhang, Han Li
    bioRxiv 2020.05.11.089011; doi: https://doi.org/10.1101/2020.05.11.089011

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