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- April 6, 2021.
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- Version 1 (August 25, 2020 - 14:55).
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- Srivatsan Raghavan1,2,3,4,*,
- Peter S. Winter1,2,5,6,*,#,
- Andrew W. Navia1,2,5,6,7,*,
- Hannah L. Williams1,3,*,
- Alan DenAdel8,9,
- Radha L. Kalekar1,2,
- Jennyfer Galvez-Reyes2,5,6,
- Kristen E. Lowder1,2,
- Nolawit Mulugeta2,5,6,
- Manisha S. Raghavan1,2,
- Ashir A. Borah2,
- Kevin S. Kapner1,2,
- Sara A. Väyrynen1,
- Andressa Dias Costa1,3,
- Raymond W.S. Ng1,2,
- Junning Wang1,
- Emma Reilly1,
- Dorisanne Y. Ragon1,
- Lauren K. Brais1,
- Alex M. Jaeger6,
- Liam F. Spurr1,2,
- Yvonne Y. Li1,2,
- Andrew D. Cherniack1,2,3,
- Isaac Wakiro1,
- Asaf Rotem1,2,10,
- Bruce E. Johnson1,3,4,10,
- James M. McFarland2,
- Ewa T. Sicinska3,11,
- Tyler E. Jacks6,
- Thomas E. Clancy1,3,12,
- Kimberly Perez1,3,4,
- Douglas A. Rubinson1,3,4,
- Kimmie Ng1,3,4,
- James M. Cleary1,3,4,
- Lorin Crawford8,13,14,
- Scott R. Manalis6,15,
- Jonathan A. Nowak3,11,16,
- Brian M. Wolpin1,3,4,¶,
- William C. Hahn1,2,3,4,¶,
- Andrew J. Aguirre1,2,3,4,¶,# and
- Alex K. Shalek2,3,5,6,7,17,¶,#
- 1Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA
- 2Broad Institute of MIT and Harvard, Cambridge, MA
- 3Harvard Medical School, Boston, MA
- 4Department of Medicine, Brigham and Women’s Hospital, Boston, MA
- 5Institute for Medical Engineering & Science, Massachusetts Institute of Technology, Cambridge, MA
- 6Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology, Cambridge, MA
- 7Department of Chemistry, Massachusetts Institute of Technology, Cambridge, MA
- 8Center for Computational Molecular Biology, Brown University, Providence, RI
- 9Division of Applied Mathematics, Brown University, Providence, RI
- 10Center for Cancer Genomics, Dana-Farber Cancer Institute, Boston, MA
- 11Department of Oncologic Pathology, Dana-Farber Cancer Institute, Boston, MA
- 12Department of Surgery, Brigham and Women’s Hospital, Boston, MA
- 13Department of Biostatistics, Brown University, Providence, RI
- 14Microsoft Research New England, Cambridge, MA
- 15Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA
- 16Department of Pathology, Brigham and Women’s Hospital, Boston, MA
- 17Ragon Institute of MGH, MIT, and Harvard, Cambridge, MA
- ↵#To whom correspondence should be addressed: Peter S. Winter, Ph.D., pswinter{at}mit.edu, Andrew J. Aguirre, M.D., Ph.D., andrew_aguirre{at}dfci.harvard.edu, Alex K. Shalek, Ph.D., shalek{at}mit.edu
↵* Equal first author contribution